BtaINT0078536 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002313 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor type 2 [Source:RefSeq peptide;Acc:NP_776794]
Coordinates
chr5:83804664-83805801:+
Coord C1 exon
chr5:83804664-83804847
Coord A exon
chr5:83804848-83805544
Coord C2 exon
chr5:83805545-83805801
Length
697 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
GAGTACTGCTTTATTTTCAGTAA
3' ss Score
4.9
Exon sequences
Seq C1 exon
TATTCCTTCTACCAGCAGTTACATGAACAAAAAAAATCAGAAAAATTCTTCAAAGTTCTCTACGACCGAATGAAGGCTGCTCAGAAAGAGATAAGATCAACAGTGACAGTTAACACCATCGACTTAGGTAACAAGAAAAGGGATGATGACACAGAACTGATGACATCTGGCCCACGGATGAGAG
Seq A exon
GTAAAGGACTAATTGAGTATTTGGGAGAATGAGTAAGAGAAAAGAGGGTAACACAATTTTTAGAGCTCATTTATCTTGTCATCTCACTTACCTTAGTCTAATTATGCCACTTGTGCCTCTGTGTATGGAACACTGTCCTTGAATTATTGTGGTCACGGTATTGACCTTCAAACAGCTCTGTGGGGTCAGCCTCAAACAAAGAATTATCAGTGCAAAGCAACTAGTGACATGAAAATATTTGATTTCATCGTGAAATTCTTGGTAAAAAACAACTACCCATCCCTTCTGAATGCTCATGAAATGTAAACTGTAAGAACCAGAATTATAGCACTAAACTCTATGAAAGATTCTTGGAATTTGAAATAACAAAGTCATCAGGAGAGTAAAAACAAATTGTATAAATATTTTGAACTTTGTACTATTTTATCACTTTCTTGTATTTAGGAGCTCTTAATTTTATATTTATCAAAAAGACAGGAGCCCTTCTAAAATGGACTAAGCATTAAGATCTTTTTTAAAAAATATCCCAGTGCATATTTAATTTTTTGGTTGCTCCTTCAGAATCTTTTGGGAAAAGTTGTTGCACCTCTTGTCAGGTGATTTGAAATCCAATTGTTAGAGAATTTGGGTAACTGTCTTTTTTTAATTAGCAAATGGAAGTTAATTCATAAATGTAAGAGTACTGCTTTATTTTCAG
Seq C2 exon
TAAGGGATTCATCATTACATTTAAAAGAGGGAATGAAAGGGCAGTTAACAGAAGCTTCTTCGGCCACATCCAAAGCATACTGTGTATACAGAAGAGAAATGGATCCAGAAATAGACATCATGTGTGCAGGACCTGAAGCAGGAAATGCCGAGGACAGGTCCACCGAGGAAGTCACAATGAGCCCTGCCATTGCCATCATGCAGCCGATTTTGAGGTTTCTGCAGTTACTCTGTGAGAATCATAACCGGGAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002313:ENSBTAT00000002982:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.339 A=NA C2=0.279
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF084546=RIH_assoc=PU(24.2=33.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAATGAAGGCTGCTCAGAA
R:
TGCAGAAACCTCAAAATCGGCT
Band lengths:
342-1039
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]