DreINT0083715 @ danRer10
Intron Retention
Gene
ENSDARG00000011909 | itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:ZFIN;Acc:ZDB-GENE-050419-192]
Coordinates
chr18:16068551-16073364:+
Coord C1 exon
chr18:16068551-16068731
Coord A exon
chr18:16068732-16073119
Coord C2 exon
chr18:16073120-16073364
Length
4388 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAC
5' ss Score
7.56
3' ss Seq
TTTTTTCTTGTAATATGAAGTGC
3' ss Score
2.88
Exon sequences
Seq C1 exon
AACTCATTTCACAATCAATTGCACAAGCAGAAGAAGTCTGAGAAGTTCTTCAGGGTCTTCTATGAGCGCATGGAGCAGGCCCAGAAGGAGATCCGTTCCAGCGTCTCTGTCAACATGTTTGAGCTCAGCTGCAGGAAGAGGGAGGAGGAGAGCGAGGGCTCCGGGATCAGACATAAGAAAG
Seq A exon
GTACACTGAAGCTTTCACTAGAAATATGAGGAAAATAGATTTCAACAGGGTTTTGCATTGTGAAAACTGACAAATCGTATCCAGGTAATGTACAGGTATATGGCAAAACTATTTCTTAGTAAAAATGTTTTCTACTGAAACTGTGTAGTTTTTAAAAGAACATGAGCGGCAAATCCGGATTAAACCATTTCCAGATTCGAAAAGCTCTCGAGTAAATAATGTTTCTTACAAACGTATTTGTGTTGCGTGATAGCAGACCACTGTAATCCACACGTGAGTCCAGCTGCACTCTCATAGCGGGGAATGCAAATTATAAATGCAACACTGACGACCCATGTGTCCGAACAATACTTTTTCTTCCACTTGTTTTAATTACGGTTGGCAACACAACATGGCGTCTCTCTGCTTTCTGAACACTGTAACAGGTAAACAGGTCTTCGAAGCTATCATGCATATTAATGAAGTTGCACCTTATGCACAATAGAACGAGCTGATTGGTTTGAACCATGTCTATCTCTTGAATTATTGATGAAAGACATCACGTTGTACCTGCTAGTACAGACAGCCAGTCTGCACGCTGGAATTCACACAAGGATGTGTGCCGTCTAATCTAATTTCTTTTCAAATCGGAAGCACGAATTTGCTTGAAATAACGTATAAACAACAAATTTTCACTTCCTTGTAAAATATTTATTCATTCATTTTCTTGTCAACTTAGTCCCTTTTTTAATATAGGGTTGCCACAGCGGAATGAACCGACAACTTATCCAGCAAGTTTTTACGCAGCGGATGCCCTTCCAGCTGCAACCCATCTCTAAGAAACACACACATTCACACACACACACACACTAGGGACAATTTAGTCTACCCAATTCACCTGTACCACATGTCTTTGGACTGTGGGGGAAACCGGAGCACCCGGAGGAAACCCACGCGAAGGCAGGGAGAACATGCAAACTCCACACAGAAATGCCAACTGAGCCGAGGTTAGAACCAGCGACCTTCTTGCTGTGAGGCGACAGTACTACCTACTGCGCCACTGCCTCGCCCTCCTTGTAAAATATGTTTGTCCTAATAGTGTTTTTAGCAGCGTGGGACATATATATGGCTTTCAACATCTCCAAAAATGTGTTTTGGTGTTTCTTGTCCTTTTAAGATTTTGCTTTCAAACATTGCTTTCCATGAAGTAAAAGTAAAATAACTTAAAAGTAAATTCTTTTCTAACTCTGGCAATATGTCTCCAACAAAGGAAGGCCCCAAAAGACCACAAAGCAGGTGTGATGTATTCAAGCCTAAAAATAAACCTTTAGAAATCACTTCAGTCTCTCACTGAAAATAGTCATGTCCTAATTGCAATGTTCTGCTTTATCATGCTTAAACCTAAAAACAAATCGGCATAGACTCTCTAAATGACACGCTTCGTCTGAAATAGAATAGGTCTCGTGAATGGCCTGTTTATCACAAACCAGTGTGCCTTAATACATAGCTTTTCATGTGAATGCGGTTCAGGCCTGAAGCAGTGTAAATGAAGGGACAGTCAGACATATGAATACTGTCTGTCCCTATTTCAACTGCTGCGATCTATATTCTCAGTCACATGAGGTCATGTGAGCAGCGTCTAGCACTTTATCAAAGGCCTGCTGTTAAGAAGCAGTGTTTTATTTAACACGTCTCATCGAGAAGGAAAGGAGTCCAAGTCCAGATTGTGTCAGGCGCTGTACTGTATGAGACAGAATCATTTAATGGAGAAATATTTTTGGTTACTTTCTGGTTGGGTTTTAAATAAAAAGCTTTAAATGTGGTGAAAATATTGATTTCTCTCAATAGCAATAGCTAAACATTTACCACAAATTATTTTGGATAGATCAATGTGTCATCATGCCGAGTCGAAGTGAGAAAAAAACAGTTCGATGATTACATTTTTTTAATTTATTAAATATTGGTGGGGTAAAAAAAAAATTATAAAAAAAATAAATAAATATTATATATATGTATCAGAATTATTAGTCCCCCTTTGATTTTGATTTTCTTTTTTAAATATTCCCGAAATAATGTTGAACAGAGCAAGGAAATTTTTTTACAGTATATCTGATAATATTTTTTCTTCTGGCGAAAGCCTTATTATTTTATTTAGGCTAAAACAAAAGCAGTTTTTAATTTTTTTAAAGCCATTTTATGGACAAAATTATTAATTATTACTTTAAGCTATATATATCATGATGATAAAAATATCTGGTTTTAATATAATTTACTGTCATCATGGCAAGGATAAAATAAAAACAGTTATTATAGAAAAGTTAATAAAACTATTATGTTTAAAAATGTGTTGAAAATATTTGCTCTCTGTTAAACAGAAATTGGGGAAAAATAAACAGGAGGGCTAATAATTCTGACTTTAACTGTATATTATTACTGAGAAATATGCTTGACTAACTTATTGAACATCTCACCAAATATTCATAACATTAATTAGTTTTTTGTAGTTGTCGGGGGTAATTTGTATTCAGCTTTAATCAAGTGCCAAACTGATTCGTTCAAAATACAGATTCATTCGGGAACAAACTGGATTTGCTCCTGAATGAATCAGTTTCATATTAGATTCAATTGCTGTTTTTCCGATTTGTTCAAATTTTCTGATTTTTAAATCCATCAAAGAAAATATAATATTTAGGCCCAATACCACTTCTACGCCTTAGCCCTTACCCCTACCCCTCGCTTTGCGTATTCATGTGAAGGTGTAGGGGTGTCCCAATTGTCTTTAGATTAACGGCGTAGGGCTAAGGGGAATGGCTTGATAGCCCTTGAAACTGAGATTTTTCAGAACCACACTCAAAATCAAGAGGTATGAAAATTTCCCAAAATACACCATCTACAACGCTAGCATGGCTATACAAGGAAGTCAGGAGATGCACAAATTCTTTTTTTTTTGTCATTATTACGAATTTTTGCAACAAACAAGCACATGTTTTAAAACATTCATAATGGCATTCGTGTATATAATTCATTATCACTCTTGTATAGTAGTCCCAGAACATACGTTCACATCTGACACTCAATGACACTCGAATACTCTGTCAGAACAGTCAAGTTGCTGGGAATGACCTTTTTACCATGTCTGGTATAATGTTAATCTTGTTAGTGTTCGTATGTTTACATAGTTGAATAAGGCCACAGTACAGTTATGAGCTTATTGCCACATTAAATGGTTATGATAACATGATATCATTGTCTTCAGGGATTTCCTGAAGATAAATACCCAAAAATTAAAGAACTGAAATAAGTACAGCAGTCACTTTCATCAGTCTCGTATGAAGCAAGAGATCGATGGATGATGTGTGTGAATGTTGTAGTGGTGTCCCATTTCTTAGGGGTAAATTTTGAAGCCCTTCCCCTTCACACTCTGGCTGTTTCTCAATTCCAAGAACGCAGAGAACAGACTTGTGTACTTGTGGAGACCGGTCTTGTCAGGTCTCCTACGAATGAACTCGGGAGACCGTGAGAACAGTTCTTCACTGGTTCTTCTTGATGGTCGCATGGCACTTACGCATTTTTAATGTAAAATTATTTTTAAAAAATGCTGTATGAATTACAGCATTCATACAATATTTTTTGTTTTTTTCCTCTTTTCACTATACGTAACATGCACAAGAGCCTTACAAATATACTTTCCACAAGACACATAAAACAGTTAAATTTCAGCAAATAAACACTTAATGTGTTTATGTCTTTATAAAGATTTTCATGTTAATGTTTACTTTCCCCATATCATTTAGGGAAGCTCCTGAGATAAACAAATTATATCTCTGAACTTTAATAATAAACCTATATTATAAAATGCTGCACTTCCCGCCTCCTTTATTCAGCCGCAATGGCTTCTTGGATTTCCTGAGCAAATTCTGGTCTGCATCCAAATTCTCAAGTCTGCATCCAGGCATCCAGGATATCAAGAACACATCCATGAACTTTCATGCGTCCTCCGTTCTTGCGGTCTTGAGTTTTGGAACTGAACTTTGGCAGTTGGTTGGCAGACATTTCACGATTTCATATTGAGAAACAGCCTTTGTTTCAAGGACCAAGGGGAAGGGGTAGGGGTACAAAAATAAAATTGGGATTGGGCCTAAATCTGAAGTACTAAAATAAAAGGCTGAACACAAAATAGAAGTATGAAACAAACAAAAATGACAGAAAAACCTTCTTAATAAAACTTAAATATTTCAGTAAAATTTTAAATAAAATAAAATGTTAACAGACAAACTAAAAAAATAAAAGCCAATAAAACATATAAGCCAATAAAACATTAACATATAATAGGATTAAAACTAACAAATTCATGTATATGATAATTTCATAACCTGAAGTTGTTGTTTTTTTTTTCTTGTAATATGAAG
Seq C2 exon
TGCGAGACTCCTTGCACCTCAGAGAAGAGATGCGGGGTCAGCTTAAAGACGCCTCCTCTGTGACCTCCAAAGCCTACAGCACCTTTCGCCGGGAATGGGACCCTGACATTGAAGCAGTGGGAACAACAGGAGATGCGACAGAGGAAGTGGTCGAGGAAATCCAAATGAGCCAGGCCATCACCATCATGAAGCCCATCTTACGCTTCCTTCAGCTGCTCTGTGAAAATCACAACAGAGACCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011909:ENSDART00000061134:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.230 A=NA C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF084546=RIH_assoc=PU(29.9=35.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]