GgaINT0122259 @ galGal3
Intron Retention
Gene
ENSGALG00000014071 | ITPR2
Description
NA
Coordinates
chr1:69895139-69896151:-
Coord C1 exon
chr1:69895968-69896151
Coord A exon
chr1:69895396-69895967
Coord C2 exon
chr1:69895139-69895395
Length
572 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
AAGGAAAATTATCTTTTCAGTGA
3' ss Score
3.26
Exon sequences
Seq C1 exon
TATTCAACTTACCAGCAACTGAAGGAGCAAAAAAAGTCAGAAAAATTCTTTAAAGTCCTGTATGACCGTATGAAGGCTGCTCAGCAAGAGATACGGTCAACAGTGACAGTGAACACTATTGATTTGGGGAGCAAAAAGAAAGATGATGATAGTGACCTAACCATATCTGTACCCAAAAAGAGAG
Seq A exon
GTAAGGAGGCACCCATGTAATGCACCCATAGTGCACTGTGTTCAGGTTGTGTGTGTTGCACCACTGATGCTATGCTGTATTGATCAATAAGTTTTAATATTAATCATTGCTGCACTGCTTTATTTGTCTGTTTTTCTCTAAATTACAAACAATAACTTAAACTGGTTGCATGGAATTAGCATTGATGAGGTCAGTGAAGCTATGCCAGCTTGCACCAATAGAAGATATAGACCCATGTTTTTAGAGAAGCTGAAATGGGGCTATTTCACATGAGCAAGCGCAGGAAAGAATGCCCACCCTGTGGTCCTTCCATTGTTCTCATCATTTATTGTATATGCAAAGAAATAGTAGGGCTTTTTGTTTTAATGTTCTGCTTCGCTCTGGTTTGTGGTTAATTTGGAACATGCTATCCCTGCATGAATGTTGCTTTGATATTCTTTGTAAGTTGCCTAGAGGTCTTTGAAAAGTTAGGCACCAAAAAAGAAAAAGTTGTGTTCGTTGTTGTTGTTTTCTTATTGTTTAATTAAACAAGCAAAAATTGTTTCAAAAATTAAGGAAAATTATCTTTTCAG
Seq C2 exon
TGAAGGATTCAACACTGCACCTGAAAGAGGGTATGAAAGTTCAGTTAACAGAAGCATCTTCTGCAACATCCAAGGCTTACTCTGTATATAGAAGAGAAATGGACCCAGAAATAGATCTTATGGGCTCAGGAACAGATGCTGCAAACGCAGAGGAGAAGTCCACAGAAGAAGCAGTAATGAGTCCTGCTATTGCAATCATGCAGCCAATACTGAGATTTCTCCAGCTGCTATGCGAGAACCACAACCGAGAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071:ENSGALT00000022784:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=NA C2=0.198
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF084546=RIH_assoc=PU(24.2=33.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCGTATGAAGGCTGCTCAG
R:
TCTCGCATAGCAGCTGGAGAA
Band lengths:
358-930
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]