BtaINT0078548 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002313 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor type 2 [Source:RefSeq peptide;Acc:NP_776794]
Coordinates
chr5:83889407-83895743:+
Coord C1 exon
chr5:83889407-83889602
Coord A exon
chr5:83889603-83895650
Coord C2 exon
chr5:83895651-83895743
Length
6048 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TCTCTGCTGTGTGTTCTCAGGTA
3' ss Score
11.68
Exon sequences
Seq C1 exon
CTTTTTGATTTGGTATATAGAGAAGAGACCCTGCTCAATGTCATAAAAAGTGTCACACGGAACGGCCGATCCATTATTCTAACTGCAGTTCTTGCCCTCATCCTTGTCTACCTGTTTTCCATTATTGGGTTCCTTTTTCTGAAGGATGACTTCACTATGGAGGTGGATAGGCTGAAAAACAGAACTCCCATCACAG
Seq A exon
GTAATGCAGTTAATATCCTTACAGAACTCGCAGGTTTGATCCCTGGGTTGCAATGATCCCTAGAGAAAGAAATGACAACCAACTCCAGCATTCTTGCCTAGGAAACCCCATGGACAGAGGATCCTGGTGGGCTGCAATCCATGGGATGGCAAAGAGTTGGACATAGTGACTGAACACACACAGCTTGTACATAGCTTGTTAAGAGGATCACAGATAAACACTAATGGAGGCAATGTTATCTTTCATTGCTTTGAAAACATTTTCTTATTCACTAAGAGCTCATGAGTGTGAAATACCCATAGGCTGTATGTTAGCTGACAGTGTATACTATTTAGGAAAATCTTTGTACAAGAAGCATCACATAAGCTCAGTCTCAGAACAGGTTTCAACAGTTGTTGACTGTACTCCAGGAGACAGTTGACAATTTCAATTCAGGGTAACTGCTTTGAGATTCTTTTCCTTCTTTCCTCCTCTTTTTCCCATTGTGGGCTATCTCTCCCAAGAATATCCAGCATCATTCACAACCATTATTTCATACATTTTTCTTACAGTACATTATATTATACTTGAATAATTGGAAAGTATAAATGCTCAAAGTATTGTCATTAATACTGTCAGAATTAAGACTGTCCATGAGTCTGTGGCTGTCAGAATTTCTGTGTGATATTTATTTTTGTTGTCTGACTGGTTAGCCATGCCCCATTTATACTCACTGTGATTCTTGAGATGTGAGGGGTGATTCTTTCTGTCTTACTTTGGATTTTTTATTTATTATTTTCCCTGATGATTTCTTTTTTCCCTTTTGCCTACATTTGTTGTTTTGGTTAAATTTCATTCTTACTCTCGTTTCACTCTCCTGTTTTGCTAGATGGACATCATAGTTACTGCACTTTGCTAACAGTTTCTCTGGGTGATTCCACTGCCTGTGGATTGCAGGGAAGGGAAGCCACAAAATAACACTCTCTTTCTTCAAACCATCAAATTTAAAAGCAGGATTGAATTAGTGGTGCTTTTAAAATATGGGATAATTAAGTGGCATTTAAATCTATTAGAGTCTAAGTGATCAAAGCGTAGAATAGAAACATCATATACATAAGTTGAAAGTTATTAGACTTGAGACTGAATTTCAGACCTAGGTAGTAGTCTTTGTTCACAGCCACATTGTACATTTTCTGCTATGACCTTTCTTGTTCTTCCTTAAATGTTTCTTTATCCAGAGATTTACAGGTATAAATATTTATAGGAAAACCTCATCTGTACAAATACACCCAAAACTCCACTTGTACTAAACTGTGAATTCCTATTCTCAAAAATCTTTGTCTTAAGTATTTACTAGGCTTAATCATATTGATTTATTCAATACAGAGTAAGTCTGACCCTTGAGTGAAGTTGTTCAGTTGTGTCCGACTCTTTGTGACCCCGTGGACTGTAGCCCACCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAAGAATACTTGAGTGGGTAGCCATTTCCTTCTCCAGGGGATCTTCCCAACCGAGGGATCGAACCCAGGTCTCCCGCTTTGCAGGCAGATGCTTTAACCTCTGAGCCACCAGGGAAGTCCAGGAAGCCTGACCCTTGGGCATCATAATTTCTGGATTCAAATGTATATAGTCATTATTGTTTTATGAATCTTGTAGTAAATAATTTTAATTGTGTTGTTTTAAAAGTAGGTTAGTGTCTTGAGAAAGAAAAATGGAACTGGAGGAATCAACCTACCTGACTTCAGGCTCTACTACAAAGCCACAGTTATCAAGACAGTATGGTACTGGCACAAAGACAGAAATATAGATCAATGGAACAAAATAGAAAGCCCAGAGATAAATCCACGCACATATGGACACCTTATCTTTGACAAAGGAGGCAAGAATATACAATGGATTAAAGACAATCTCTTTAACAAGTGGTGCTGGGAAATTTGGTCAACCACTTGTAAAAGAATGAAACTAGAACACTTTCTAACACCATATACAAAATAAACTCAAAATGGATTAAAGATCTCAACGTAAGACCAGAAACTATAAAACTCCTAGAGGAGAACATAGGCAAAACACTCTCTGACATACATCACAGCAGGATCCTCTATGACCCCACCTCCCAGAATATTGGAAATAAAAGCAAAAATAAACAAATGGGACCTAATTAAACTTAAAAGCTTCTGCACATCAAAGGAAACTATTAGCAAGGTGAAAAGACAGCCTTCAGAATGGGAGAAAATAATAGCAAATGAAGCAACCGACAAACAACTAATCTCAAAAATATACAAACAACTCCTACAGCTCAACTCCAGAAAAATAAATGACCCAATCAAAAAATGGGCCAAAGATCTAAATAGACATTTCTCCAAAGAAGACATACAGATGGCTAACAAACACATGAAAAGATGCTCAACATCACTCATTATCAGAGAAATGCAAATCAAAACCACTATGAGATACCATTTCACACCAGTCAGAATGGCTGCGATCCAAAAGTCTACAAATAATAAATGCTGGAGAGGGTGTGGAGAAAAGGGAACCCTCTTACACTGTTGGTGGGAATGCAAACTAGTACAGCCACTATGGAGAACAGTGTGGAGATTCCTTCAAAAACTGGAAATAGAACTGCCTTATGATCCAGCAATCCCACTGCTGGGCATACACACTGAGGAAACCAGAAGGGAAAGAGACACGTGTACCCCAATGTTCATCGCAGCACTGTTTATAATAGCCAGGACATGGAAGCAACCTAGATGTCCATCAACAGATGAATGGATAAGAAAGCTGTGGTACATATACACAATGGAGTATTACTCAGCCATTAAAAAGAAAACATTTGAATCAGTTCTAATGAGGTGGATGAAACTGGAGCCTATTATACAGAGTGAAGTAAGCCAGAAGGAAAAACACCAATACAGTATACTAACGCATATATATGGAATTTAGAAAGATGGTAACGATAACCCTGTATACGAGACAGCAAAAGAGACACTGATGTATAGAACAGGCTTATGGACTCTGTGGGAGAGGGAGAGGGTGGGAAGATTTGGGAGAATGGCATTGAAACATGTGAAATGTCATGTATGAAACGAGATGCCAGTCCAGGTTCAATGCACGATGCTGGATGCTTGGGGCTGGTGCACTGGGACGACCCAGAGGGATGGTATGGGGAGGGAGGAGGGAGGAGGGTTCAGGATGGGGAACACATGAGAAATAAAGGAATAAAAAATTTTTTAAAAAAATTAAAAAAAAAATAAGAAAAAAAAAATAAAAAGTAGGTTGGTGTCATTATATTATGGATATATTTTCCTTAGAAATATTATATTTTAAAGTCTTTTATGTCTTTTTTTTTTACAAAATAAGTAGACTGAAACTAAAATGTCAAGATCATCACTAAAAATAATTATATGTTTATATGAAAACTGTTAAATAAAGCATTTGTAAATGCTATACAAATCTAGCACTCAAAACCAGCTAACTAAGTTAAACTTTTGATTCTTCAAAGACTGAGAGCTTTTTGTTTCATAGAGAGTGTGTGTATGTGATACCATTTCCTTGGAAAATCACTCATATTTACGTTGTTGTTCATTGTTCAGTCACTCTGTCATGTCCAACTCTTTGCGACCCCATGGACTGCAGCACGCCAGGCTTCCCTGTCCTTCACTAACTCCCAAAGTTTGCTCAAAATCATGTCCATTGAGTTGGTGATGACATCCAACCATCTTATCCTCTGTCTCCCCCTTCTCCTGCCCATAATCTTTCCCAGCACCAGGGTCTTTTCCAATGAGTCAGTTCTTCGCATCAGGTGGCCGAAATAATGGAGCTTTGGCTTAATTTCTAATTCTGTATATTATGGCTGTTGATACATAGCATAAAGTTTATCTTTCAGTTATTAAACACTATTTTCTCCCAGAGTTGAGTGAAATTGTCAAAGATACACATCTGGAGAGCAAGTGAAATTGGGAGTATATAAATACACAACCCTTCAGGGAATGTGAAGAGTCAGGGAGCAAAGAGGAGGTTGAGATTGTAGAGTGAATGACAGGAGCATCACAGGCACGTGGGAGAACAGGGGACCGATAATTTGCCAATGGCCTTGGGAATTCAGCACAATGCAGATCCCACCTTTGGCACCAGTAGAATCTGACTCTCTAGGTGCAGGAGGCTCCATCTGACAGTGTTCAGGGGAATCCACATGTTAGGTGAGCCCAAGGAGTTGGAGAGAAAGTGGTGTTGCCAGGTGGAGGGTCCGGAGTCTCCCCTGCTCTCCCTCTTCCCTCTCCTCAGCGCTGGCCTCCTATCTCTCAACCTCCTTTCCTCTTCCCAGAAAACTGTAGAAACTTCCCAGATGGCTTCAGATGGCATCCTCTCTTCTGCTCGTCCATGTCATTCATTGCAGCCATGGCTCTGGTTCTGTGTCTTATGCATTCAGAACCTTGCTGGATCCTGGGCTGGCTGTGGAATGCTTTGTTTAAAATCCTTAGCCTGGAAGCTCTGCCTCGTCTGTGCCTTTGCGGTGCCCCTTTTCATAACAGCTGGTTCCCGGAACTGCAACCTTTGCTCTCTACCTATGTAAATCCTATCTCCTCGAGATGGATCTTTTTCTGAAAAGCTTTGTATTTTCCTTTTTAGAATTCCCTTCTCCCTCTCCTGATGTACTCCTTCACTTCACCTGTACTTCACTTCCTTTATTCAGCTATAACTATGTCTGTATGTCTCTGTGTTCCCTAATGTGGGTTCTTCAAGGCCCCAACTCTGAGCCCTCAGAGCCTAGCACAAAGTGAGTAAATATTTACTAATTTAAGGGAATGGCTATAAGGGACACTCAGGAACCTCACCTCTCTTTCTCTGACCACCTGACTCACACTACACCAGTGATATACCTGCCAAGCTGCCCCAGTCAGGGTGCGGGGAGAGACAGAGGTGAAATCGGCGACCTCCTTCCTCATAGACCCCAGCTCTCTCATCTCCAGGGCTTGTGTCAGCAGCAAACCCAGGCCTAGTCCCTCTCCTCATCACATGACCGAACTCCAGCCACCATTCTCCATTTCCACCCTCTCCTCATTAAACAACCAGGCTAACCTTGCGGGGGTGCTGCCCTGAAATGCACTTGAATGTTTTTTCAGTGTATGAAAATGAACGGATGGAAGAGGAAATGGCAGCCCACTCCAGCATTCTTGCCTGGGAAATCCCCTGGACAGAGGAGCCTGGCAGGCTATAGTCCATGGGGTCACAAAGAGTTAGATACAACTTAATGGTTAAACAACCAAGAAGACAATAAACGAAATGTGCTTAAAGGGGGAAAAAAAAAAAAAAAAAGTGAACCAAATCCTCTCCCTGTATCTTCTGGACTTTCCTTGATGGCTTCATCAAGGAAAATAAATGGGTTTGAGAGGAATGAACCTCTTCACTTTGTTACTAACAGCAAACTATGTGAAACTTTTTTATGTGGAGAAGAAGGTTGCTATTTTCTGTTACATCTGGGCCAGGGAGGTAGGTGGTAAGCCAGCAAGCAGATGGATCCTTGGGGACTAAGGACAAAAAGGAAGATCCGGAAAGGGATCTGGCAGATGATTCTCGCTTCCTTGAGATACTTTATGCCCTGTGCCCAGGAGCCCACATTTTACAGTTAGAGCTGCCACCTCCAGCCATGGGCATCAGTGGCTGAGAGCTCATGGGGGTGCCAACGACCCTGGGGGACCGTGTTGCTGGCATTTCCAAGTCACAGCCCTGAATGCATTTGGCCATGGGAAACTTGTTATACAGGGTGGTTAGCGCCTACAGAATTATTAATACTTTATCTCAGCCACTTTAAAAAGACAGAAAAGGCTTTTAGTGGGTTGGTCCAAGAACCTATTCTCTATTTATAAAATTGCTTCAGTAGGCAAAACTGTATTCAGAGTTCCACACTAACTTAACCAAAACCTTTAGGAAGGCAGCTAATTTGGAGTAATAGTGCCTTTTATGTGTGTGCCTTTGTAATTTATGCTCACTTCTTGTCACTTGTATATTCACCTCTTTACCCTGTCTCTGCTGTGTGTTCTCAG
Seq C2 exon
GTAGCAATGCAGTTCCTACGATGACTTTAACTTCAATCCTGAGTACGTGCGAAAAGGACAACTGCTCACCTACAATACCAGCTTCAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002313:ENSBTAT00000002982:56
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.094
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(28.6=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(13.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]