DreINT0083610 @ danRer10
Intron Retention
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39983988-39985715:+
Coord C1 exon
chr6:39983988-39984177
Coord A exon
chr6:39984178-39985640
Coord C2 exon
chr6:39985641-39985715
Length
1463 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAA
5' ss Score
3.28
3' ss Seq
TTCATGAATGTGTGTTTCAGAGG
3' ss Score
6.77
Exon sequences
Seq C1 exon
TTGTTTGACCTGGTGAACCGGGAAGAGACTCTTCTGAACGTCATCAAGAGTGTGACTCGAAACGGCCGCTCCATCGTCTTGACCGCAGTGCTGGGCCTCATCCTGGTCTACCTCTTTTCTATTGTTGGATATATGTTTTTCAAAGATGACTTCATCCTGGAGGTGAACCGCATCTCCAACGGCACTCTGG
Seq A exon
GTAAAACACACACACACACACACACACACACACACACATACACACACACACATATACAGTTGAAGTCAGAATATTAGCCCTTCTGAATTATTAGCCCCCTGTAGGCATGGGCCGGTATAAGATTCTGAAGGTATGATAACCTTGGATAAAAATATCACGGTTTCACAGTATTGTGATTACTGCTCTAAAACATATTCTTTTTAAATGTCTGGGTAAAAAAATAAATATTTTTTCCCTTTAAACAAAATATATTTTATTTTGAGAAACATTTAAAATATTTTGGAACAGTAAACATGTCAGGCTGAATAATTCAAATGGATCATTTGACTTCCATCTTCATTAGTTTCAAAAACAAAGACTTTTTTTACAATTTAAAATAGCGTCTTTGGAAATCTTTTCTGCTGGAGATACTGTTGTCCTGAAAAACAAACAAAAAAAAAACATTAATGAAAAATCTTACACATACCTTAGGAACGTTATTGCAGAATTTTTTGCCGGTTTTAAAACCTTGATTTTTCTAAACCGCGCTATACCTTTAAAACGGGTAACATTCCATGCCTAGCCTCCTGTTTTTTTCCCCCAATTTCTGTTTAACACATTTCTAAACATAATAGTTTTAATAACTCATTTCTAATAACTGATTTATTATATCTTTGCCATGATGACAGTAAATAATATTTGACTAGATATTTTTCAAGACACTTCTATACAGCTTCAAGTGACATATAAAGGCTTAACTAGGTTAATTAGGTTAACTAGGCAGGATAGGGTAATTAGGCAAGTTATTGTATAATGATGGTTTGTTCTGTAGACTATCGAAAACAAATATAGCTTAAAGGGGCTAATATTGACCTTAAAATTATTTTTTTAAAAATTCTAATAAATAAACCAAAAAATAAATAAATAACCAAATAAGACTTTCTCCAGAAGAAAAAATATTATCAGACATACTGTGAAAATGTCCTTGCTTCATAAAACATAATTTGGGAAATATTTTAAAAAAGAACAAAAAATTAAAAGGGGGGGCTAATAATTCTGACTTCAACTGTTATATACAGTACTCACACACACACACACACACACACACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTAATATACACAGTTGAAGTCAGAATTATTAGCCCTCAAGAAAATTTTTTCCACAATCTTTTTCTGTTTTTAACGGCGAGAAGATTTTTTTCAACACATTTCTAATCATATTAGTTTTAATAACTCATTTCTAATTATCTTTGCCATGATGATGACAGTGCATAATATAGTAGATATTTTTCAAGACAGTAGTATTCGGCGTTAAGTGCAATTTAAAGGCTTAATGGTGTGAAATGTGTTTTCTGTTGTTCATGAATGTGTGTTTCAG
Seq C2 exon
AGGAGGGGGTGACTTTACCTGCTGGTTTTTGTGATGCGAGAAACGGGTCGTGTCTTTCTGATGATGTTGACGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655:ENSDART00000149019:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(27.0=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTTGACCTGGTGAACCGG
R:
CGTCAACATCATCAGAAAGACACG
Band lengths:
262-1725
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]