RnoINT0006983 @ rn6
Intron Retention
Gene
ENSRNOG00000053339 | AABR07062512.1
Description
NA
Coordinates
chr4:180481859-180485395:-
Coord C1 exon
chr4:180485200-180485395
Coord A exon
chr4:180481952-180485199
Coord C2 exon
chr4:180481859-180481951
Length
3248 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
3' ss Seq
TCTGCTCTGTGTTCCTCCAGGTA
3' ss Score
13.05
Exon sequences
Seq C1 exon
CTTTTTGACTTGGTGTACAGAGAAGAGACCCTGCTGAACGTCATCAAAAGCGTCACACGGAATGGCCGCTCCATCATCCTGACTGCGGTCTTGGCTCTTATCCTGGTCTACCTGTTCTCCATCATCGGCTTCCTTTTCTTAAAGGATGACTTCACCATGGAGGTGGACAGATTGAAAAACAGAACTCCAGTCACAG
Seq A exon
GTAGCAGTCCCACTCTCAGAGCTCTCCCCCTGCTGTGGTAACTTGTACACACCTTATTGGTGGGATTTCGGACCATCATCGATAACCTTTTCACTTTCACCCTTTTGAATTGTGGTCTTGTTTACCACTGCTGTGGTTTGGGGGCCAGATGTCCTCCTTGATTCGTGGGCTTGAACATCTGGTCCCCACTTGCTGGCCCTGACTTAGCCAGTGGAGCCTCGCTAGAGGAAGTGATTGACAGGGGTGGGCCTTGCGGTTGGGTAGTCTGGCCTCACTTCCGGTCTGCTCTCCATTCGCTGGCGGCGAACGCCATGTGACCCGCTGCCACGAGGCTCTGTATCCCTTTGAACTGTTGGCCAAAATAAACTGTCCGTTTCTTCCTCAAGTTGCTCATTGTTAAGTGTTTGATCCTAGCAATGATGAGAGTAACTAATACAACATGTAAAAGCTGAGGATTTGAAATACTTTGGCCTGTATCCTGTCAGAGCGGTTGGGAAATACACACGAGACATCATCTGTGCTCCATCTTACGGGGTTTCGTAATGCCGAGCGTACAGCAGGAGGCAGCTCGGCTGCGGGAGACTGGAGGATTCTCTTCTTCCTCTTCTTTCCATTTCCCCAAAGGACAGTATCCAGCACCTCAGAGCTGAGCCGACACTTGGCTCTTATTCCACCCGCATTGCGTTGTATTCAAACAACTTAAAATGATAAATGCTTTGATCTGGTGATCATCAGGTAGTGTGAAGTGTGTTTGGGAAGATGAACATCAGAGCCGTGGTTAAAGGACCCCTTTCCTCAGTGTGTGACTGCTAGAGTCCCTGCGTGATGTTTGCCACCAGCAGGCTTAGACAGCACCCAGTGTTCTCACGGAGACGTGTGCTCTCACCTTTGTTGCCAGGTTAAATTCCTTTCTTAACCTTTCCTCTGCTTTGCTTGATTGAGACTGTGGTTCTATGTTGTGCTGTTTTCTTGACTGCATTAACTACTGTTTATAGAGATGGGGAATCACAGAAAGACATCACTTTCTCTCTTCAAACCATTGAGTTTCAGCTAACATTTAACAGTGGAAACAAATGCGGTGTCCTTTCTTTCCTTTAACACACAATCCTTAATTACAAAATTGACAGTGTATGGTAGTGTCTTCAATAAGATTACGGAGTGACTATAAGTGAATCTGAATGGCCTGCCCATGCAGCAGAAATGTCAGCGTTACAAATTTTAAATTACAACACACACCTCGTACCCTTGCACTCCACACCAAATACCAGACGTCGTTCTTGGGAATGTGAAGTATGCTGTTGCTTCACATGCTTTTTTAGAGTTTTACACGCATGCTGTCAGCTTTTGTTGTAATAAAGAGACCAAGCGAATAAATTTAATTCATGGAAAAGACTTATTCTGGCAGCTCATGTTTTCCAGTTAGTGATCGTCTAGCCAACACCTGAGGGCTGTGGCAAGACAGAAGCACATAGTGGTTGGGAGAAGACCGTCACCCTGTGGTGGCTTTGAGGCAGAGGCAGAGAGAGGAAGGTTCCTGACACCCCTTCAAGGTTACAGTCCGAGTGACCTCTGACCTCTCCTTTCACACCAGGCCCCATCTCCCAAAAGATCTGAACGCTCCCTGGGCTGGTGACCAAGCCCTCAGTTTGTGGAGTTTGAGTTGAAGTTGCAAACCTTTACTTTACATTTCCTGTATGGAGGAACGGCTTCTCTGTAAGGCCCGATCTGTGTCCTTTCTAAACTCTTTAGAAACCGTCTATCCCCAGCATCCCACGGGTCTTGGTTTTTAATTACTTGCTAGATTAGAGGCCTGGCCACAGTTTGTTCAGTAGAGAAACCGAAGGGTTTAAACTTAACTGAACAACATGTACGGTAGGGACTGTTTTTCAAATTCCATGGTAAATACTTTTTGTTCTTTGATGAGGAAGTTGGTGCTATATTATGAATGCACATCCTTTAGAAATAGGAAAAATACAACATGAAGACACTAAAGCTAAAATTTTGAGCTCTTTACTGAAAATACATATGCACAATTTTATGAAAATCAGTCAAAGAAAACTTTTGTAAGTACTACGAAAGTGCAGCCCATAGGGACAGCTAGCAGACTTAAATCTCTGGTTCTCTATGGGTTAAAATTTTTCATTTTATAGCTTAAATGCCTAGATTTAAAAAAAAATCTTTGTTTCCTTATTTTAAATTTCATTTCTGAGTCCTTCTCCAAATAGCTGTTTTCTTTCTCTTCTAGGCCTCACACCCCTCTTCAACTGTGTTACTATTTCGTGTTAACCTTTCTCCACCCATCAGCCCCTTTTACATCTCTGCTTCTCCCTGTGCTGTCAGTTCTCCAAAGCCTTGGACTCTGAGCTTGGGATGCATCAAGTACTACGGGAATGCCACCGGGGCTCACTCAGAAACCATCTCTGTCCCTCTCTGACCACCTGGCTTGCAGTCCTGCCCATATCACTGCCAATGGTGACACTCCTTCTCCATGATGTCCCGACACAATGTATGGGCGCTGCTGCCTCCCTAGCCCTCCCACATCTCACATCTCCTGGTGACACCAGCTCATGTTGTAGCTTTGCCTTTAGTTCTCTCAGTGTGTGAGGAGTTGCACTGTCAGTCAAACTTTGATACAAACAGAAAGTTCATTATCTTCTGAGCCAGGGAAACCACTGAAGAACCCCCAGGAAGAGGGGTTCCTTGGGGCTCAGGAAGGGCGTGGACCTTGGGCTGTTTGAAGCCTTTCTTCTCAGGGTCCCATATTTCATAACGAGAACTGCCCACCCAAGTTCCTTTCCTCAGGCACAGGACTGGGGCTTGAGCTGCAGAATGCTCACTGCCCTGAGAGGACACAGTCCTGGTGGCATCCCAGGTCAGAACCCTGAACCCAGAACCCTGAACACACCTGGTCATAGAAATATTAGTATTTGTGGTGGTTTAGGTCAATAGTATTATTAATACCTTATCACGGCCACTTAAAGGAAATACACACACACACACACACACACACACACACATACAGACACACACACACACACACACACACAAATGGTGCTTTCTGCACATTGGCGATGCATCTATTCCTTATTTATGAAATTGCTTTAACAGGTAAAACTGTTCTCAGAGCTCCGGGCTAACGTTGCCAAGATGAAGTTCTGCTGAAGCACTCAGACGCCCCTGTGGCTGTGTTCTTTGGCCATGCATGGCCACACTTCTTCCATTCAACTCTCTGCTCTGTGTTCCTCCAG
Seq C2 exon
GTAACGACGGGGTTCCCACTATGACCTTAACTTCCATGCTGGGAACCTGCCCTAAGGAAAACTGCTCACCCACGATCCCCTCTTCGAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053339:ENSRNOT00000086465:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.104
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(28.6=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(13.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]