BtaINT0078588 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7744286-7744768:+
Coord C1 exon
chr23:7744286-7744394
Coord A exon
chr23:7744395-7744677
Coord C2 exon
chr23:7744678-7744768
Length
283 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
CCTCGCTCCCTTCCCTGCAGGGC
3' ss Score
11.96
Exon sequences
Seq C1 exon
GCTGATCCAGCACACCAAGGACCTCATGGAGTCGGAGGAGAAGCTGTGCGTCAAGGTGCTAAGGACGCTGCAGCAGATGCTGCTGAAGAAGACCAAGTATGGGGACCGG
Seq A exon
GTGAGTGCCCGGGGGGCCGGGCGCCAGGCGGGCCTGGCCACGGGGGCTCAGGGCCAGGACCGCCGGGCTGGATGGTAAAGGGTGAGTGCCCGGGGGGCTGGGCGCCGGGCAGGCCTGGCCACGGGGGCTCAGGGCCAGGACCGCCGGGCTGGATGGTAAAGGGTGAGTGCCCGGGGGGCTGGGCGCCGGGCGGGCCTGGCCACGGGGGCTCAGGGCCAGGACTGCTAGGCTGGATGGTAAAGGGTGAGATGGGCTGCCATGGGCCTCGCTCCCTTCCCTGCAG
Seq C2 exon
GGCAACCAGCTGCGCAAGATGCTGCTACAAAACTACCTCCAGAACCGGAAGTCCAGCTCGAGGGGGGACCTCCCGGACCCCATGGGCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245:ENSBTAT00000053490:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.323
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATCCAGCACACCAAGGAC
R:
CCCCTCGAGCTGGACTTCC
Band lengths:
173-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]