HsaINT0083323 @ hg19
Intron Retention
Gene
ENSG00000096433 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:6182]
Coordinates
chr6:33652134-33652465:+
Coord C1 exon
chr6:33652134-33652242
Coord A exon
chr6:33652243-33652374
Coord C2 exon
chr6:33652375-33652465
Length
132 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TCACTCCCATCCTCCCCCAGGGC
3' ss Score
11.61
Exon sequences
Seq C1 exon
GCTGATCCAGCACACCAAGGACCTCATGGAGTCGGAGGAGAAGCTGTGCATCAAGGTGCTGCGGACCCTGCAGCAGATGCTGCTCAAGAAGACCAAGTACGGGGACCGG
Seq A exon
GTGAGTGCCCTGGTGGGGCAAGTGCTGGGTGGGCCAGTCAGGAGTACCCAGGGGCTCAGGGTCAAGCCCGTCAGGCCAGTGGTCAGTGGTGGGCTGTACCCACAATGGGGCCTCACTCCCATCCTCCCCCAG
Seq C2 exon
GGCAACCAGCTGCGCAAGATGCTGCTGCAAAACTACCTCCAGAACCGGAAGTCCACCTCGCGGGGGGACCTTCCCGACCCCATAGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096433-ITPR3:NM_002224:37
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.258
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATCCAGCACACCAAGGAC
R:
CCTATGGGGTCGGGAAGGTC
Band lengths:
194-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)