GgaINT0141539 @ galGal3
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
NA
Coordinates
chr26:4451944-4452310:-
Coord C1 exon
chr26:4452092-4452310
Coord A exon
chr26:4452064-4452091
Coord C2 exon
chr26:4451944-4452063
Length
28 bp
Sequences
Splice sites
5' ss Seq
GTTGGGAGC
5' ss Score
-5.09
3' ss Seq
CATGACGTTTATTTGTCTTGGCA
3' ss Score
-2.01
Exon sequences
Seq C1 exon
GCTGGTGCAGCACACCAAGGACCTGATGGAGACGGAGGAGAAGCTGTGCATCAAAGTGTTACGGACGCTGCAGCAGATGCTGGTGAAGAGGAACAAGTACGGTGAGAGGGTGAGCACCGCAGCACTATGGCATGTCCCCAGCCCCACTGCTCAGCTGGCAGCTCCCTGCTCACTGCAGCCCGCGGGCACTCAGCCTTGTTCTGTTCCATCGCTGGCGTT
Seq A exon
GGGAGCCTCATGACGTTTATTTGTCTTG
Seq C2 exon
GCAGGGCAACCTGCTGCGAAAAATGCTCCTGAACAATTACCTGCAGAACAAGAAGTCCAGCTCCAAAGGGGAAATTGTGGATGCTGCTGGAGGAGGTGAGTGCCCCTCTCCTGCACCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.390
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGTTCTGTTCCATCGCT
R:
CCTCCAGCAGCATCCACAATT
Band lengths:
120-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]