BtaINT0078596 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7747814-7748130:+
Coord C1 exon
chr23:7747814-7747909
Coord A exon
chr23:7747910-7748028
Coord C2 exon
chr23:7748029-7748130
Length
119 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
AGCAGGCTCTGCCCCGCCAGGTG
3' ss Score
5.87
Exon sequences
Seq C1 exon
GACAATGCCTCCAAGCTGCTCCTGGCTCTGATGGAGAGCCGGCACGACAGTGAAAACGCCGAGCGCATCCTCATCAGCCTGCGGCCCCAGGAGCTG
Seq A exon
GTGAGGCTGGGCTGGCGGTCAGGTGGGGCGGTGGCCCAGGTGGGTGCTGGGCTGGCTGTCAGGGCCCAGCCCTCCCTGCGCCCCAAGAAGAGGGCACTCAGCAGGCTCTGCCCCGCCAG
Seq C2 exon
GTGGACGTCATCAAGAAGGCCTACCTGCAGGAAGAGGAGCGTGAGAACTCAGACGTGAGCCCCCGTGAAGTGGGGCACAACATCTACATCCTGGCGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245:ENSBTAT00000053490:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.265
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAATGCCTCCAAGCTGCTC
R:
AGCGCCAGGATGTAGATGTTG
Band lengths:
194-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]