MmuINT0084572 @ mm9
Intron Retention
Gene
ENSMUSG00000042644 | Itpr3
Description
inositol 1,4,5-triphosphate receptor 3 [Source:MGI Symbol;Acc:MGI:96624]
Coordinates
chr17:27251792-27252074:+
Coord C1 exon
chr17:27251792-27251887
Coord A exon
chr17:27251888-27251972
Coord C2 exon
chr17:27251973-27252074
Length
85 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
GCTGTCCCCCACCCCCTCAGGTG
3' ss Score
9.01
Exon sequences
Seq C1 exon
GACAATGCCTCCAAGCTGCTCCTGGCTCTGATGGAGAGCCGACATGACAGTGAGAATGCAGAGCGCATCCTCATCAGCCTTCGGCCTCAGGAGCTG
Seq A exon
GTGAGGACGGGCTGGCAGCAGGTGGGGTCGAGTGCAGAGATGGTGCTCAGTGTGTAACAGCAAATGCTGTCCCCCACCCCCTCAG
Seq C2 exon
GTGGACGTGATCAAGAAGGCCTACCTGCAGGAGGAGGAGAGGGAGAATTCAGAAGTGAGCCCACGTGAAGTGGGCCACAACATCTACATCCTAGCACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042644-Itpr3:NM_080553:44
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.265
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAATGCCTCCAAGCTGCTC
R:
AGATGTTGTGGCCCACTTCAC
Band lengths:
181-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: