DreINT0083749 @ danRer10
Intron Retention
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21298282-21298559:+
Coord C1 exon
chr8:21298282-21298377
Coord A exon
chr8:21298378-21298457
Coord C2 exon
chr8:21298458-21298559
Length
80 bp
Sequences
Splice sites
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
3' ss Seq
TCTGTGCTGTATGTCTTTAGGTG
3' ss Score
10.75
Exon sequences
Seq C1 exon
GACAATGCCTCTAAGCTTCTTCTGGCTCTGATGGAGAGCCGTCATGACAGTGAGAATGCAGAGAGGATCCTGTTTAATCTTCGACCCAGAGAACTG
Seq A exon
GTCAGTTTGACTGCATCATGTTTGTCTGCATGTAAAGTATAATGGTAGTATTTTAACAGTTCTGTGCTGTATGTCTTTAG
Seq C2 exon
GTGGAGCTGATTAAAAAGGCTTATCTGCAAGAGGGTGAGTGTAAGGAGGGAGAAGTGTCACCACGAGAAGTTGGGCATAACATCTACATCCTGGCACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741:ENSDART00000142836:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCTAAGCTTCTTCTGGC
R:
TATGCCCAACTTCTCGTGGTG
Band lengths:
170-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]