BtaINT0078609 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7754227-7755823:+
Coord C1 exon
chr23:7754227-7754387
Coord A exon
chr23:7754388-7755661
Coord C2 exon
chr23:7755662-7755823
Length
1274 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCACGGGGGATGTTTTTCAGAAC
3' ss Score
4.8
Exon sequences
Seq C1 exon
GTCTGGAGAGGGACAAGTTTGACAACAAGACCGTGTCATTTGAGGAGCACATCAAGTTTGAGCACAACATGTGGAACTACCTGTACTTCATCGTGCTGGTCCGCGTGAAGAACAAGACGGACTACACGGGGCCGGAGAGCTACGTGGCCCAGATGATCAAG
Seq A exon
GTGAGGGCCTGGGGGGCGACGGGCGGGGGGACGGCTGTGGACCCTTGTTCAGAGGCAGCAGGGGCCGGGGAGCTGGAGCTGGATCCTCTGGAGCCCCCCACCCAACTGTGCTGCAGAGGGGGCCTCTGGAAAAAGCCTCCAGAGGATGCCGGTGGTGTCTGGGGCCCATGGATGCCCGGTGTCAGGCGACCCTGCTTGTGGGGACTGCTCTGTGGCCCTTTCTGAGGGGCCTTTTCTGTTGGAGGTGAGAGGGAGGGCGGCTTCCTGAAGCCTGGGTGGTTGCAGGCTGAGAGGGTGCCCGGATGAGCTTCATTCTGTCAGACTCAGGACTCAGGAGACATCCACCATCACTGCCGTCGAGGTAGTAGCGAGTGAGTGAAGGAGAGGTCTGGAGGGTAAAGGGCGTCCACCGGGCCGTCAGAGGCGGGGCCTCCGCAGATTGCTGCACAGCGGTGTGTCTGCAGTCGCTTCAGTCGTGTCCGAGTCTTTGTGACCCCATGGACTGCAGCCCCCCAGGCTCCTCTGTCCATGGGATTCTCCAGTCAAGAATACTGGAGTGGGTTGCCATGCCCTCCTCTAGGGGATCCCAACCCAGGGATCAAACCCACGTCTCTTAATGTCTCCTACGTTGGCAGGTGGGTTCTTTACCACTGGTGCCACCTGGGGTTGCAGCTTCTAAAAGGAGAGAAAACAACTCGGAAGGGGGTTCTGTGGGTGTTTTGAGTCTGTATTTGGACTGGTCTTGAGTGCAGGTGTGTCTGTTGGCCTGAGAATTCAGCTTGCAACAGGTGCCCCCTCGCCCCCCACCCCGCCTCTGTCTCGGGAAGCGTAGCTTCGCCTGAGTGTCAGATGCCACTGCCCCCTGGCAGAGCCCGCCCCCTCAACGTGCCATCTGCCTGACTTGCGCCTTCCTGGGGTGTGGGGCCCGCTGTCAGGGCGGGGCGGGAGGAAGGAAGGAAGGAGAGACTGGTCTGAGGGCACAGGCCCGTCCTCCGCCTTGCAGGGTGTGAGGAGTAAACGTGATCCCAGCGCCACAGCAGCAGGAGACACGGGCTGGAGGAAGTCAGCCTGTCTCCGCGCTGTGCTCCCCGCCCGCACAGGGTCACTCCGGCCCCGCGGGCAGGACCCTGGTCAATTCAGATTTTCCCATGACACGTCCCTGGGAAGTAATTTGGCCATGGGTGTGGCAGCAGGCTTCCCCCACATGACTGCTTTTCTAGAGGCCTTCCTGGGCTGGGCCCGAGCGCGTTCACCCCACGGGGGATGTTTTTCAG
Seq C2 exon
AACAAGAACCTGGACTGGTTCCCCCGGATGCGGGCCATGTCCCTGGTGAGCAGCGAAGGGGAAGGGGAGCAGAACGAGATCCGCATCCTCCAGGACAAGCTCAGCGCCACCATGAAGCTGGTGTCCCACCTCACCGCCCAGCTCAGCGAGCTCAAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245:ENSBTAT00000053490:56
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGAGGGACAAGTTTGACA
R:
CTCCTTGAGCTCGCTGAG
Band lengths:
318-1592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]