GgaINT0141558 @ galGal4
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr26:4561937-4562721:-
Coord C1 exon
chr26:4562561-4562721
Coord A exon
chr26:4562099-4562560
Coord C2 exon
chr26:4561937-4562098
Length
462 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
CTCCACGGTCACCTTCCCAGAAC
3' ss Score
5.64
Exon sequences
Seq C1 exon
GACTCGAACGGGACAAGTTTGACAACAAGACAGTGTCCTTTGAGGAGCATATTAAGTACGAGCACAACATGTGGAACTACTTGTACTTCATAGTGCTGGTGCGAGTGAAGAACAAGACAGACTACACAGGTCCTGAGAGCTACGTGGCTCAGATGATAAAG
Seq A exon
GTACGTGTCCTTTCTGAGCAGCCCTACTGCACCCTGCCTGCCCCAGAGGAACGTTTGAGAACAGTGGGCTTGACAAAAAAAAAATATTTAAGAAAGTCGTTGTTCCACAGTTCTTTCTTAGCTGATTAACCCCACTTTGCAATCTCAGCCAACAACGTGCTGTCTATTTGATGTTTTGTGCTGTGGATAGAAGGATTGTACCAGGCGGCACAGACTGTGACTGCAAGGTGATTTCAAGGCAAAAAGGAAAAGCAAGGAAATTTAGGAAAAAAACCTTCTGAACCTGGACCCAGGCTGGGGGGAAAAAAGGTTAAATGAGTAGGTGGTGGGAAATGTGCAAAGATGCAGATAAGCCTTTGAGAATTTCTTCAGTCCCTAAGCATAGGCAGACCTCCATGGAAATCCCACTGGGTCTTTTGTTTCCTTCTCACCCTCTCCCATTCTCCACGGTCACCTTCCCAG
Seq C2 exon
AACAAGAACCTAGACTGGTTCCCCCGGATGCGAGCCATGTCGCTGGTCAGCAATGAAGGGGAAGGGGAACAGAATGAGATCCGAAATCTTCAAGACAAACTCAACTCAACGATGAAGCTGGTGTCCCATCTCACCTCCCAGCTGAATGAGCTGAAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:56
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.278
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGAACGGGACAAGTTTGACA
R:
GCTCATTCAGCTGGGAGGTG
Band lengths:
310-772
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]