DreINT0083762 @ danRer10
Intron Retention
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21316516-21317385:+
Coord C1 exon
chr8:21316516-21316676
Coord A exon
chr8:21316677-21317223
Coord C2 exon
chr8:21317224-21317385
Length
547 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAT
5' ss Score
7.87
3' ss Seq
TTCTTGTCGTCTCTTGTTAGAAT
3' ss Score
7.25
Exon sequences
Seq C1 exon
GTCTTGAGAGGGACAAGTTTGACAATAAGACAGTGTCATTCGAGGAACATATTAAATTGGAGCACAACATCTGGAACTACCTCTATTTTATTGTGCTGATACGGGAGAAAAACAAGACCGATTACACCGGCCCGGAGAGCTATGTGGCTCTTATGATAAAG
Seq A exon
GTACATTACAGAAATGAAAAATTCCTACTGATTGGATAATGGTTACACCTTTACCAGTGTTATTTTAGTAGTATTTATACACTTACTGTATGTACTGAAAATTAAATCTTTTAGTTTGTTTTTTTAATTTTCTTTCGACTTATTTTGTTGCATGCATGTGCTTTTTGTTTTATGTATGGTATTCAGCTTTATTTAAAGGGACAGTTCACCCAAAACTGAACATTTTGTCATCTTTTATTCAGCCTTGTTTCCAAAACATGCTTGCCTCTGTTTCTCTATTGAGCAGAAAATAATATATTCTGAAGAAAGCTGCTAACCATTGACTTCCATGGCATTTGATCTTCTTACTATGGAAGTCAATTTTTTTTAACTTTCTTCAAAATATCTTGTTTTGTGTTCAACAGAATAAATAAACTAAATAATAAATAAAGGTTTTGATCCACTTGAAGGTGGGTAGTAGTGAGTAATTTTTCATTTTTGGTTGATCTATGTCTTTAATTGATCTTGCAATGGGTTTTGATTCAGTCTTCTTGTCGTCTCTTGTTAG
Seq C2 exon
AATAAGAACCTGGATTGGTTTCCACGCATGCAGGCCATGTCTCTGGTTGTAACGGATGGAGATGGAGAACAAAATGAGATGAGGAACCTGCAGGATCGTCTTAGCTCCACCATGAAAGTGGTCACACAGCTCACAAGCCAGTTAACAGAGCTGAAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741:ENSDART00000142836:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.389
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTGAGAGGGACAAGTTTGACA
R:
TCTTTCAGCTCTGTTAACTGGCT
Band lengths:
319-866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]