BtaINT0078763 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021687 | JADE2
Description
jade family PHD finger 2 [Source:HGNC Symbol;Acc:HGNC:22984]
Coordinates
chr7:47655167-47663705:+
Coord C1 exon
chr7:47655167-47655196
Coord A exon
chr7:47655197-47663647
Coord C2 exon
chr7:47663648-47663705
Length
8451 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
GGGGCCTATTTTCGTTGCAGATG
3' ss Score
8.37
Exon sequences
Seq C1 exon
GGGGCGCATGCAACAACAACTTTTGGAAGG
Seq A exon
GTGAGCTTGGCGACCTTCTTTATTAATGACTGCGGCAAAGCGCCCCTGGGCCGGGGAGGGGGCGCGGGCGGGCGGGGGCGCGCCTGGGCTGCAACTTGCCCCGCGGGCTCTGGCTGGGCGGAGGGTCTGCGGCTGGAGACCTGTGCGGAGAGGAGGTCGCGCGGCCGGGGACGTGGGTTCGGAGGACCCGGGGCTATTTGCCCTCCTGTCTCCCCGAGTTTCATTTTGTTGATACGCAGCACGTCCGGGCGCCGAACCGGGTCGAGCCGGTGCACATGACCCCGCGCTGGGTTCACGTGCAGCCGGTCCGGTCCCAGACACCTTCCGGGGGCCACCGCCTCCGCCCTGTCGCCCCCTCTCCCGGCTGGGTGCACGCGGGCTATGCACGCGGGGGCAGCATGCTCGGTTCCCGGGCGCGGAGGCTCTGCACAAATTAAGCAGTTTTTTGGAGGGGCGGGGGATACCCTTTCCAGGTGAGTATGGAGGGTTCACAGCTCCAGCGCGGGGGGCGCGGGTTGGGGTCGGGGGCAGCCCCCCCGTCCAGGGCTGCGCGGGAGTCCAGCGAGGGAGAAACGCTCCTGGGAGTGGAAATGTACCGGCGGCCGCCGGAACGGCGGGTGCGCGCCCGCGGGGCGACGGCAGGGGGCGTGGCCCTTGTTTACCTTCTCCCAACTCTGCCGGTTCGCGTCCCGCTCAGGGGACGGTTCTGCAGTCCCCCTGCCCTCCGCCTCCGCCCCGATTCCTGGGTGGTACTGGGAAGATGTAGGCAAGTGGCGCCCCGAGCTTGGGACTTACACACCTGACCCCCAAATGAGTGACATTGCAGCCCCCGCCCCCACCAAGCACCGCTGCAGTCCCTCTCCCGGATCCCCGGCCCCGCCCCGCCCCCAGCAGTGGCATCTTCCCGGCCTCACCTCCTTCCTCCCTCTCTCCCTCCCTCCTTCCCACCCACTCGCCTGCGCCTGCGGAGCGGCTTCTGCCCGCCTCCTCTCCGCCTGGGTGCAGACTTGTGGCTCCCTCCGGTCCCTTCCTGCTTATCCCTGGCCCCTGAGATACCCTGTGCTTCAGGCCATGGATAGAGGGCGTCAGCTTGGTGGTTCGTAGCTTTAATGTCAGAAAAGGAGGATGTCTGCGAGACAAGCAGGAAGGCTTCACTGTAGCTTCTAGAGGCCCAGGACACCCACCCTCCCCACACACACTCTGTCCCCCACCACACACAGCTGCCACCCCCAAGGGGCTCAACTACTCTCACCCGTTATACCTAAGCTCCTCCTTCCGCTCCCGGGTCAAGGCCACCTCCCGGCGCCACCCCCTGCTCGAACCGCTTCCAGCCAGGGCTGGAGCCCCCCGCAGCCACCTCCGGCTCCTCCTCCCGGCTCCCGCGGTCAGAATCACGCCGGCGCGCCTCCAGCCTGCTGTCCCGCGGACTACCTTTAGGGGCAGGCTGGAGGCGCGCGCCACCCCCCTCCCAATCCCCTTAGCCTTTGCTGCGGGCCGGGACGTTTTTCCTTAGCACCTTGTCTTCTGGTTTCATGCCCTGGGCTGGTGGGGCGGGAAGGGCTGTGTTTCCCTTTGCTCAGTGCCAAGGGCAGGAAGCATCCGGCGCCTCTGGTCTCTGCAAATTCCCAAACTTTGCCCTCGCGCTTAGCATTCTCTCTCGTCCTCCCCCACTTTGGAATTCCAAGACATGAAGTTTTATACAGGCTTAAGTTTGCAGGGGTCACCAGGAGGCATCGCGTTTGCACTCCTAGCTGAGGAGCTGAGAGGACACAACTGACTGCTACCTTGCCTTTGTTGCAAGGGGGAGGAACCCTGAGCTTTGAGGCCTGACAGGCTGTCAGGATATCCCTTTAATGTTTATGTTTGCTAACTTAGTCTTGGGCTGGGTGGTGTAGGGCCTCCTGGCCTCTCCTCCCAGGGTGACATTAACTCCCTCCCTTCACTGGTAAAATTCCCAGTAGGACATTTGGCAGAAGAGCTGGGCAGGGAGCTGCCAACCGGGCCTGGCCCTGTTTCCTGGGTTCCCAGGGTGCTGGCTTCTCCCCTATCCTGACTTCCTTTCCCACCTTAGGGCCCCAAGTGAAGGCACCATCTCTCCTGTCCCATCTTCCTCAGGCGCGTTGGGACTCGCAGAACGATCTAACAAGCAGAGAAGGAAAATAACAACAGAATAACTGTAAGAGGAAGGAATGAGTAATAAAGCCGACCCAGGCAGGGAGGAGGGCTTTCATGTTTAAGAGATGCTATTTGCTTTTTAGGTCACAGGCTGCAAAAACAGGCTTTGATCCGAAGTGGGCGAATAATTTATTGAGAAAGTTTGCATGGTAGGGGAAAAAAGGGATGTTTGTTTGATCTGGAGGCCTCTCACTTGTCCCAAGTGCTGTTGGCTGTTGTCTAGAGTGGAAAAGCATTTGGTTCCACAGCAAATGCCTCACTGAGGGAAGTCCTCGCCCCAGGCAGCAAGACTTGGAGTGAGTGTTGGTTTTGAAACTGTTTAGCCAAGGGTCTCCCCGGCACTTTTGGAGTTGAAGTGTTTAAGGGTAGAGTTGTTTGGGCTCGGGATGCAGCAAATGTTTCCAGAACATTTCCCATCCAACGTGCTTTTCCTTTCCCTAAATGGCCTGGCAGAATGGCCAATAACACTGATCCAAGAGGCAGTCGGAAATCTCCACTTAGCTTTTGTTGACAGGTGAGGTGGGACTCTGATCCCCAACCCCCAAGTCCTTCCAGAATCTTGAGGTTAGGCTTTTGGCACTGATTTCCACATCCTTGAGGTTGGGGGCAGGGTATTCTGATTAATCGTTGTCCCAGTTATCAGGGAGGTACTTATCTTACACCCAAGACCCAATCAGAGGCTTTCAGTCCAAATTCTTCACAGCTCATCCAGCAGGCTCTTTTTGGGACTCACAGTTTTCCCTTTGGGGTCTCTAAGGGGAGGCCAAGTTGAAGTTGTGAAGAGGGGAATATCCGTGTCTTGCCCTGTCCTCCATGTAAGATCCTCATTATGTGTCTCAAAGTTGAGGAACCCAGGAAGATTCTCAGGAAACCCACAAGAATCTGGAGTACCCCAACCATACTCCAAGTTGTAGATCTGTGCACTGGGTGCTGTACCCCTCCACCCCCCAGGTGGGGGGCAAGGTCAGACAGCCTAGGTTTGAGTGCTGGCTTTGCAGTCACCAGCTGTGGCAGTTGCTCCATGCCTCAGTTTCTTCATCTGCAACTGTACCTCATGGTGGGTGTGTGGATTAAGTGATATGTTGCATAAAGAAGAATGAGCACAAAGCCGGGCATGGGATAAGCACCTGATTGGTATTAGCTATTCTTACTATTAATACCTGGATAGGACCCAAAGGAGCTGACATTTGACCTCTCCCCTTTAAGGTAGGCCAGAGAGCCAGCTCCCTTCTCTGAAGAAGGAACCAGAAGGACCCTGCAGTTGCCAATGGGCAGTCATTTGTGGAGTGAGTGGGCTGAACTTTGCCCTCTCTGAGGTGGAGGGTAGGGTGCGAAGGTGCTGAAGGACAAAGTAGACAAAGCCCCTTTCTGTCTCCCAGGATCCCCTTGGCATGTCCTCAGAACTGGGTCTGGAGGGTGGGTGTGGAGAGTGTGTTCTAGGGGAGCTGGGTGCCCTTGGGACAGGCGAGCAGTGATGGGTGTTGGAGGAGGGTTAGGATTCCCTGTGATTGGAGAAGCAAGTCTGAGGATTTGTGTGTACAAAATCACTGTTGTCACAGCAGTTACTGTCCCTGAGAAGGCATTAAAGTTAATGAGAGATAGGAAAGAGTGGGGCTTTGACCCCCATTTAAAATGGTTTAAGAGTGTGCAGCTCTTGTTTTCTGAATGTCTGGCCTTCCCGACACAAGCAGGCTCTGAGGACAGGTTTTCCAGCCGAAATATCATTAAATTGTATTAGCATCTTATTACACACACGCCTTAGCGGTCTGCCTCAGACAGGGAGAGTTTTTGTTTCTCTTTGAAAGATTGTGTCTGGAATGGTAAATTGCCTGCTTGAAAGCCTTTTCCTCCCCTTTTTAAAGGAGGAAGACGAAATCCTGCTGTGTGTGGTGGCAGGCTGGGCAGGCCTGGTGGCCCCCAGAGAGGAGAGGCCGGAGGCCAGGTTGGGGTGTTTTAACTGCCCAGGGAGCTGCTGCAGTAGCAGGCCTGAAAGACCCACTGTTTCCAGGGTCAGCTGGAGGGGCGTTAATAGAGGCCCAGGGTGTTTATTTGAGTTTATTTGCGGAGAGGTCTTTAAAGGGGCTGGCATTGGGCATTGGTGTTTCAAGTCCAGACCTGGGTCCCCACTAAGACCAGTGGCTAGTGCTGCCAAGAAAACATCTGCCACCAAATTGCTGCCCTATTACTGAGTTGACATTGATCATTAGCCAGGAGCCCAACCAAATAAAGCCTCTTGGAAAACGTGTGAGGTTAAGACGGGGAAGGCGGGCTGTGCAAACAGGTCGAAATCTTGGGCTGGGGTGTTTGCTCCCACAGGCTGCGAGCAGGCTGGCTGGGCTGTGTGGCCCCACACTTCTGGAGGGAGGAGACAAGAGCACACTCAGCATTTCATGTGTACCAAACCCCTGTTGTGTGCTAGGTACAACTCGAAAGGGTACTGGGCACAAGCAAGGATCCAAACAGTTACGCTTTTTCTTGTTGTAGAACACATACTCTGAAGGAGAAGGACATTCAACAAGTAGCTCAACAAACACTCCTAAAGAAGCTGAGTAACTGGGTGGTGGGCTTTCTGTAAATAAGGCAGCTGGCATAGACCTCTGTGATGTTTAAGCCGAAACCTGAAGGATGAAAAGTCCAAGGTGCCTGGATTGTGTAGACCATTACAGGCACAGAGCACACCTGTGCACAGGTCTGGAGGCACGGACTGTCTGTTTCAGGAAACGAAAGGAGGCTGGTTCAACTGGGAAGTGGTGGGAAACGGGCTGGTGGTCAATATGCAGTAGGCAGGTACCAGATCATATAAAGTCTTATGGTTAGAAGCTTGAGTGTTGCCCTTGATCAACAGGAAGCCTGTGAAAGATTTGAAATAGGCCATATGACATGATCTGATGTATGTTTTTGAAGATCATTCTGGCTACTGTGTGGATCCTGGATTATGAGGGGGATGAATGAGGAGTCCTACGAGAGATGAGACTGGCCTGGGCCAGCGTGGAAGCAGTAAAGATGGGAAAGGTGGCTGGATTCTCCGCAGGCTCTGGAGGGAGTGCCCACTGCGCTTGCCAAGGGTCAGCAGTGGGGTGGAGGAGGCACAGCAAGGCTGCTCCCTGAGGGGACTTTAGGACATCCACACTCCCAGAGGAGAGCTGTGTGTGTCTCCATAGCTGGGGAAGGTGTGGGAGTACAAGCGGACTGGTGGCAATGGCAGGAAAAGGGGACATTTCTTTCCCAGGGTCTCCTTTGTGGTACTTCCTGTCCCTAAAAATAAGTACCTCATGACCCTGAATATTTTCCTAGGGCAGACCTTGCTTTGGGAGAGGTTAGGGGAGCCAGCAGAGAGGAAAAACGAGAGGCCAAGATCAAGTCTTGGCACCCATCCCCCACCTGCACGTGTAGCCCTGGATTTCAGCTTTGGTAAGAATCCTCAGTGTCCTCTGTGCTGGGTTGGAGGGGGACGTCATGGGGCAAAGCCTTGTCCCGCAGGGGAGGCCAGGCCTCTTTTGAGGCTTCATTGGCCACTGAGAAGAGGCTTACCTGAGGCAGGGAGACCTTTCGAACAGACTTGGTTCAAAGAAAAGAAGCAAAGCAGTGGTTTCCCTCTGAAGCCTAGTTATTATTCCAATTAAGCCGCCTCAAAATCTGCTCCCATAATAACATGCTGTCCAGGAGGACTCTGGGGTGTTTTCCGGAGGAGCTGGCTGAGGGTGGGGTGCAGGTCTGTGTGCTGACAGGTCACACTGGTCCTGGGGAGCAGGGAACAGTTGTAGGAGGAGGTCCTGGCAGTCAAAGGGTCCTGTTGTCAGGAACCTTCCTTACTGCACAGCTCACTGCCTTGCTGAGGAGGCCTTCAGGTGGCTGCTGGTAGAATTGTTCACCTGGCCCAAGTCTGCTGTGGTATTAATAACCAGCACCCATATGGAGTGCCAGCCACTGTGCTGAGGGCTTTATGCTGCTCTCCTTCACTCACCAGCTGATTCTGGCCCACAGATGTGTTTAGTTTGGCCCTCTCGAAGTGTTTTAAATATCTAAATCAGTTGCCAGCATTTTAAGTTCAGGAGATTTATGTAAAATTCCAGATCCAATTTGTGTCTTTGGGGAGGTATGTCTTTCCCAAGGTCCCTGGTCTAGTGAGGGGTGGAGATAGGATTTGAACTTGGCCTCCCTGAATCCAGTGCTGCTGCTTTTATGCTATGGGACAGCCTGGCTTGCAAGTGCCTGTTTACTGGAAATGAAGAAAAATGCCGTTCATGTAGAGGATTTCGGAAGAAAACAGATGGGTGCACTAAGAGCACTTCTCCCCCTTCTCCTGCCCTACCTGTGACAGCTGGGTTGGCAAGATTCAGGCTGGAGTCAGAGTTGTGTTACAGTCACCTCTGTCACATGCAGACCCAGAGGACAGCAAGGATGGGCAAGGATCTGGGGGGTGGAGTGTTATTGCCCCATTCAGTCATTCAGTCTATGACCTGAGCCACTGGGCTGCACAGAGGCAGAGTAGTCTCAAGGTCAAGAGCATGGTCTCCTGAGTCAGAGAAACCTGTTACAAGAACTGTGATCTTGGGCAAGTCACTTAACCTCTGAGCTTCATTTTCCTCACCTGCAAAAAGGAAGCAGCCATCATGCCCGCCAGCACCAAGGGCCAGTTCTGAGGCCTCATTGGGGTCCCTGTGTGCCAGGATGCGCCCCTCCCCAAGCAATGGGTACTTAGCCGTTTCAACTCTGGTTCCTGCCTCCTTGGAATCCGTGCTTCTCCCCACCAGGCATGCCTCCAGGCCTCCACACCCTCTGGAGAGCACTTGGCCTCCACCTTTGCAGCTGGGCAGCAAGCAGCCCCAATGAACCTTCCATCCTAACCCTACTCTCGGGAGACATGGGGGTGGAGAAAAGCTCCTGGCTAAGGTCAAGTTTGAGGCCAGAGGGTCCTTCTGAGTAGCTCAGAGTTCTGGGTAATTGCAACCCACCTTAGAGAGCCAGTGCTCCTAAGGCCTCTGCAAGGCCACAATAAAATAAGGTGACCCCTCCCAGGGCTCCACATGAGCAGACTTGGGGTGACAGCAGGTGGCAAATGGGATTCACAGTGGGGCTGGGCAGCCTGTTGGTCGGCAGCTGGGCTTTCTCCCTACTGACACTGGTTCCTTGTCCTTTGTTGTGTACAGTGAGGCAGCCCAGGGTCTAGGCTGACAGAAACATGGTGAAAAGCACCGTGGGCTCCGAGCCCCGGGTCTGTTCTCTGAATTGGGACTCAGCCACTGACTAGCTGTGAGACCTAAGGCAGGTTAACAAGTCTCTCAGTGTGCTCCCCTCCAAGAGGGGACCAGGGCAGGCTCTGCCACCCAGGACTCTGCAGGATTAGAGGAAATAGTGGGTAGGAAAGCACTTCCAACAGGCAGGAGCTGACAAGGGCACAAAGGCAGCTCAGTGTGGGCTCGGGGATCAGACCACGTGGATTCAAATCCCAGTTCAGCCAAGTCTCTAGCAGGACAAGGCACTGAGCCTCCTCAGTAAATGAAGCTAATAGCTCACAACTCCCCAGGTTGTTAGGAACACGAGATAGCTGAGTTGGCATGGGAAGGGGAAAGAACTCAGTGTGGGAGAGCCGCCCTTCTACCTTGAAGCTAAACATTGTAGTGGAGGGAAAGTGAATTTGTATTTTTACCTGGAGGTGGACACTGAGGGGAAGGTGGGCAGCGCAGCCCATTCGCTCTGGCCCTGGTGTGGCTCAGAAGCCAGCTTGGAGCCTCCCTGCCCCCACCCCAGTTCCATGCCTCTCTGGCTGCTGCTCTCAGGATGTGCAGAATGTGCATCCAGTGCTTGCGGGCTGGCTTGCCCCTCAACTCCCATAGCCTGGTCCTCCTGGGAGAGTCTGTCTTGTTTCTGTTTCCCCTCCTCTGCCTCCAGCAGGGCGCCACTTGCAACTTGCAGGTGAGAGTGGATTCCGTGGCGGGTGAGGGAGCTGGGCAGAGGCAGGTCCAAGTCACTGCTCGTTCTGGGGCTGCTGACCTGCCTTGTCCTGCCTCGTTGTCATCTTTGACTAGATTCTCTGTTGTGTGAGGCTCTGGGCTCAGGAGCTGAGAGATGCTGCCCCCTCCCCCAGCCCCAGGGCCCATGTAGGTGGGTGAGAGAAGGGGGAGACTGCCTGAGGAGAAGGCTAGGGCATGGCCTTGTTCTCATTGTTCCTCTGCAGCGGGCGAGTGTGGGGAGGTAGATTGACGGGCAGTTTTCTGAGAGCTTGAGGATTTCCCAAGCTGCCTGTGAGTATAATGGGGCCTATTTTCGTTGCAG
Seq C2 exon
ATGGAAGAGAAGAGGCGAAAGTACTCCATCAGCAGCGACAACTCTGATACCACTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021687:ENSBTAT00000028903:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.950
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]