RnoINT0076937 @ rn6
Intron Retention
Gene
ENSRNOG00000004956 | Jade2
Description
jade family PHD finger 2 [Source:RGD Symbol;Acc:1309152]
Coordinates
chr10:37305710-37311625:-
Coord C1 exon
chr10:37311535-37311625
Coord A exon
chr10:37305768-37311534
Coord C2 exon
chr10:37305710-37305767
Length
5767 bp
Sequences
Splice sites
5' ss Seq
GCGGACAAG
5' ss Score
-12.1
3' ss Seq
CTTCTTGCCTTTTGTTGCAGATG
3' ss Score
11.04
Exon sequences
Seq C1 exon
TAAGGGCCCCAGGCGAACACACCAGCCCTCCAGGCCCTCCTGTCCCATCTTCCTTGGGCGGGTTGGAACTTGCAGAGCAATCTACTAAGCG
Seq A exon
GACAAGGAAAATAAGAGAATGAACTGTAAGGGGGGGAAGGAATGAGTAATAAAACTGACCCAGTCAAGGAGGAGCTTTTGTGTGTAGGCTATGCTATTTGCTTTTTAGGTCACAGGCTGCAAAAACAGGCTTTGATCCGAAGTGGGCGAATAATTTATTGAGAAAGTTTGCATGGTGTGTTGGGGGCTACGGGGGGTGGGGGGGCATGCCTGTTTGATCTGGAGCCCTCTCCTGGGTTGTTCCAAGAGCTGTTGGCTGCTGTTTTGAGTGGGAAAGCATTTGGTTCCACAGTAAATGCCTTTTAGAGGGGAGTCCTCACCCTACGCAGCAGGATTTAACAGTGAATGTTGGCTTTGAAACTGTTTGGCCAAGGGTCTCCCCAACACTCTTGGAGATGAAGTGTTTAAGGACAGAGTTGTTTGGGCTCTGGACACAGCACATGTTCCCAGAATGTTTTCCCATCCAACATGTTTTTCCTTTCCCTAAATTGCCTGGGTAAAATGGCCAGTGACTCCTATCCAAGAGGTTGTCAAAGATCTTGGCCATTTAGTTCTCATTGATAGCGTGTATGCAGGGGTCGCCAGGTCTCTGTTGTACTGTATCCTCTAAATTTAAGCCTTTGACCCTGACTCCCCTACCTTTGTTTGAGGTTGTGGGCAGGATATTCCAGTTATTTATAACCAGTGTTTCTATTAAACTAGAAGGCGGTTGGTTGCCCCAACGCCTCCACCAGATGCTTCACTGTGTGTGCAACAGGCTGTCTGGAGATCTCATGGATGAATGTTTAGGTTGGATGAGAGGTTACCAGGCTAGAGTTGGGGCTGGGGGATAACGTTGGCTTGTCATGTTCCCCCCTGCGATAGGACCTACATCAGGAGTCACCGAAACATGCAGACGGCGGCGGGTCTTAGCCCAAAGCTTCGGCAATACGGGAAGTTGGTTCTGAGCCTTAGTTTCTGCTCAGAAATCTCATTGGCGTTTGGAAAACTTCTTCTGTACCTTAAGCCTTCCTGAAAAGTTGAGCCCTTTGGCCATGGAGTTGACTAGCCTAGGTTTGAATATAGCTTCCGGCTGTGGTAAAGGCACTGTAGGGTCTTAGTTTACTTATCAGCCAGTGGGATTGATAGTAATTTCTACCTCTAGGTGAGCTTAAGGAGTAATAGACTGTATTAAAGACTAAACCTGGGTCTAAGGGATGTAGCTGATGGCCAAGCACTTATCTAGCAGAGTCCAAGGCCCTGGGTTCTAGCACCACAGTGAAAAGAGAAGGAAAAAGAGGTAGCCTTAAGTGTGCGTTAGCACACCACACAGCGTTAGCACTCTGTTAATGAACTGAGGCAAGCCAGTTTATTATATGCATTATGGTCTTTGATCTGTCTGCCCCAAGCTAGACCAGAAAGCCAGCTCTCTTCTCTCAAGAAGAGGAGAGCATCTAACAGGTGTCCGTGGGCAGCTAGACTTAGGAATGGTCCACTGAGATTTGCCCTGTGGGGCGAAGAGTAAGGTTGAGGAAGTATTGAAAGATAAACTAGAAGGAATCCGGCACACTCTTGGGAACTCCGAGGTTGGGTTGTAGAGTTAGCCTGTATGATAGGTACTGTAGGCACTGGAAGTAGGGCCTCGTTGGGACACAGGGTAGGCAGTGATGTGGCAGGAGAGGGTTCCAGTTCCTCTTAGGCTTGGAGAAGTAGAGTCGACAGTCAACAGCCTGCAGCCCTCTTGCCCTATGTGCACAGAAACATTTTATTTTTTGTATCTGCAGTTATTGTCCCTGAGAAGGCATTAAAGTTAATGAGAGATGGGAAAGAGTGGGGCTCTGACCCCCGTTTGAAGCAGTCTAAGAGTGCGCGAGCTCCTGTTTTCCGAGAACGTCTGGCCTTCCCTGCACAAGGAGGCTCTGAGGACAGGTTTTCCAGCCGAAATATCATTAAATTGTATTAGCATCTTATTACACACACGCCTTCGCGGTCCGCCTCAGACAGGGAGAGTTTTTGTTTCTCTCTGAGAGATTGTGTCTGGAATGGTAAATCGCCTTCTTGAAGGCGCCCCCCCCCCCTTTTTTTTAAGGAAGACGGAATCCTGCTGTGTGTGTGAGGGCAGGCCTGGTGGCCCCTGGAGAGGAGAGACAGGAGGCCAGGTTGGGGTGTTTTAACTGCCCTAGGGAGTGGCCGGAGTAGCTGGCCTGAAAGACCCACTGTTCCCAGGGTCAGCTGGGAGGGCGTTAATGGAGGCCCAGGGTGTTTATTTGAATTTATTTACAGAGACATCTTTAAAAGAGACTGGCATTGGGCAGTGGTGTTCCAGGGCCAGACTTTAGTGGGGGCTAAGGCCGGTGGCCTGTGCTGCCAAGAAAACATCTGCCACCAAATTGCTGCCCTATTACTGAGTTGACATTGGTCATTAGCCAGGAGCCCAACCAAATAAAGCTGCCTGGAAAATGTGTAGGGTCAAGACTGGGAAGGAGGACTGTGCAAACGGGGGGAATCGTGGGCTGGGGTGTCAGTTTCTGCCAGCAACAGGCCAGCCAGCTGGGCTGTGTGGTCCTGACACTCCATGAGGGAGGGACCCGTTGTGTGTTCAGTACTCCCCATTATACTGTGTGCAGTGTGAGAGTTCCTGGCATTCACACAAGGATCTAGCCAGACATGCTCTTTACTCATTCCCAAGAAGGACAGTTGGCAAGTAGCTCACCCTGATGTGTGCTCTGAAAACGGGGAAAGGGGGCAGCTCATTTCTCTAAATAGGGTTAATGGTCAAAAACTGACACAGGCTTGCACAGCTTGTGCCCAGGTCTAGAAGCAGGAAGAACCTTTAGCTTGGACGAGAAAACAAAATGAGAGGCCTGAGGCTGTAGCTCACTGGTGAGTTCCTGCCTTGTATGCATGAGGTCCTGGGTTCGGTCCCCACTGTTGCAGGGGCAATGCCACTGCCCTGCTGTATAGTGAGGAAGGGGGTGGTTACTGCGAACAGGTAGGCAGGGTCCAGATTGCTGTAGGTGTTGTGGGGATATGGAGATCTGACCTTGGGTCATCTGGAAGCCTAGGGTAGAGTTTACAGGGAGGGGAGTGAGGCAGGGTGTAAGCTCGGAAGATCTCTTTGGGTGCTGTGTGGAGTTTGGATTCTGTGAAGGAGGTGACGAAAGGGAGGAAATGAACTTAGATGGGCCCAGGTGAGAGGTGAGATGGCTTGAACCAGGCAGATATGTGTAGAGTTGGAAAACGTGGGCCTGTTCGGAGCCCTTGGGCCACTGCTCCATGGAGGGCCTTCCGGTTACCCACAGTCCAAAGGAGCGCTCTTCCCGTGTGTGTGCCATACTGGGGTGGTTTTGCAAGTGCAGTGGACCCAGAAGAATGACAAGAAAAGACCTTTCTTGTTTAGACTCTCCTTTAGAGATGGATTACAGGATCTCAGAAGCAAGTGTCACGTGTCATGGAAGACATCTGCGGGAGCAGAAACTTGATTTGGGAGAGCCGGGACAGGGTATTGGAGAGGGAAACCTGAAGGCCAGGCAGACTGAGCAGCTCTATCACACACACCTGTTTGGGGGCCTTAGTGGGCCAGGTGATTTGAGAGACACGGGGCTGCCTCTTTGATGGGGCTGGATGTAGGACTACCGGCTGGCGGGTTACCTGTTGGTTTCTGGGCAAGGATTCAGCAGTATAAGAAGGGTATGGGCAGCTATGGTCACTGCCTATGTTTTCCAAGGGGCCGGCCTCTGTACTGCTGCCTGTCCTGGCCCTAGGCTGCCCTGCATTTACTAGCTAGGTCTGTACGGTGCTTCAGCCCCGAGGCTGCACTCAGTCTTCAGACCCATTCACTCATCCACTCCTGTCAGCTGACTCCCGCCAACAAATGTGTTTAGTTTGGCCCTTTCAGGGTGTTCTTCAAATTCTGACTCAGTTGCCAGCACTTTAAATTCTGGAGATGTATGGGGAAGTCGGATCCAGTTTACCTCCTGGGGGAAGTATTTCTTTGCCAACATCTCTGGCCTTGTGAGCGTTGGGGCTAAGATTTGGCAGCCCCCCTCCCGCCCTCTTAAATCCATGGCTCCTGCTCCTCCTCTTCCTGGACTGGAGGTCCCCCCACCCAGGGACTTGTGCATGTGGAGCCTATGGCTGGCTACAGCTGAGAAATCCAGTCAGCCCCCAGCCAGCTGTTCGTGTTGCAGGAGATCCTGGTTTGGAGGACTGTTCCCCTCTTTGCTGAAACAGAGAACCATAGGAGCCATTGGATTGGCGAACTTACAGCCACACAGGGACGGGGCTAGGTTGGGCCAGATGTGGGCTGCGGCCAGAGTTCTTTTCAGAGTCAACCTTCCTCAGATCCTGGATGTTTCAGAGGGTGATGGTTTTGGTTCTGGGCTCCCTCTCTGCTGCAAAGAGGTCATGAAGTCTGATGGTCAGGAATTGGGTCTTCTAAGTCCGTTATAAATTCTGTCACCTTAGGCAAGTCACCCAGCCCCTGAGGCTCCTTTTCCTCATAGACTCTTTAAGTCAGAAGGACACAATTGTCATAGCTACCAAGGGGCTGTTCTGAGAGCTCCATGGGGTCCTTGTGTGCCAGAGGTCCCCCACTCCTGCCTGCTGTAAGGGGTGAGATTTTTATAATTGTTTCTGCTTCTTGGACTGCTTGCACTGCCCAGTGTGTCTCAGCTCTTTGCCCTTTAGAAAACACTGGGCAGCAAGCAAGCAGCCCCGTCCAGCTCCTCCCATTCTAGTGGGGGGAGGGCATGGGTAAAAATCTCCTCCCTGAGGTCAGGGGTTAAGCAGAACCACTCACAGGTCTGGGTAATTGTCCTTCCAGTGAGTAGATATTTCAGGGTCTCTGTGGCACTGCGGGAAGATAGAGGCATCTCATAGGTGGACAGGAGCAGGCTAGAGATAGAGGACAGTAGGTGTTGGGAAGCAGATGGGGTGCACTGAGTGACTTCTCCCTGAGAACTAGAACTGACCCGGAACATGGTGGGAAGCACCCTGGGCCAGGTATTAATTTAAGCCTCTCCAGGTGTTCTCCAAGCAGGCTCTGCCATTCAGGCTTCTGTAAAACCTGAGGAAGAAGTGGGTAGGCACAGCCTTCCAGGCTGAAGTGGATTCTTTACGCAAAAGGAGTTCAGGGTAACCTCAGGAATCAGACCTCCGACTCTGGGGTTCAGCCCTCAACTCCATTAACTCGTTAAGTAGCAGAAAGAGGCTGGCTTCCTCTGTAAATGGGCCTGTGTCTTGCAGCTCATCAAGCTGTTAGGAACTCAGCACCGTGGACTAGAATGTGAGGGAGCTTCTCCTAGTGACTTAAAAGTTAGATGGCACAGGAGAGATACAGTAGGATTGCATTTTACCCAAGGATGGACCCATTTCCACACTCCAGTAGCCATCATGCTCAGGATTGGGCCTCAGTGATGGTTTGTGCCTTACTTACTTGGGCTTTATTTCTCCCTCCTCCCTCTAGGGAGCACTAGATTGGGAAGTATCTGCAATAGGTCATGTTTCCTGACCTGCTCATTTCGTTGAAGGGGAACTGGGACTTGAGCCGTCATTATCACCATTCAGTCTGCGTCTGCTGGCCTCCCTGCGGTCCTTTGACACCCATTGGCAGACTTCTGTTTGTCCACGTTCCTCCTCGGGGCCTCCTTTCGAAAAAGCTGGCTCTGTGGGTGGGTAGAGAGAGAGGATGAGTCTGGGAGAGGGCCTTTGTCCTTTCTCTCAGGGTGCGTTGAGGATTCCCCCCTGATGTCTGGGAAGATAATATTCCTTCTTGCCTTTTGTTGCAG
Seq C2 exon
ATGGAAGAGAAGAGACGAAAATACTCCATCAGCAGCGACAACTCTGATACCACTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004956:ENSRNOT00000043343:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.929
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF105134=EPL1=PU(1.1=10.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]