GgaINT1015736 @ galGal4
Intron Retention
Gene
ENSGALG00000006424 | JADE2
Description
jade family PHD finger 2 [Source:HGNC Symbol;Acc:HGNC:22984]
Coordinates
chr13:15133026-15133192:-
Coord C1 exon
chr13:15133145-15133192
Coord A exon
chr13:15133084-15133144
Coord C2 exon
chr13:15133026-15133083
Length
61 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
GCTGTTCATTTTTGTTGCAGATG
3' ss Score
9.99
Exon sequences
Seq C1 exon
TTTGGAGCCCTGGGTGCCCTGCTGGGGGGTGGCACCTGGGGCGGGCAG
Seq A exon
GTGGGGGTGCAGAGAGGGGATCTGGGCATGGGTTGTAACGTGCTGTTCATTTTTGTTGCAG
Seq C2 exon
ATGGAAGAAAAACGACGGAAGTACTCGATCAGCAGTGATAACTCAGACACCACTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006424:ENSGALT00000010368:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=0.925
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGAGCCCTGGGTGCC
R:
GTGGTGTCTGAGTTATCACTGCT
Band lengths:
101-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]