HsaINT0123915 @ hg38
Intron Retention
Gene
ENSG00000043143 | JADE2
Description
jade family PHD finger 2 [Source:HGNC Symbol;Acc:HGNC:22984]
Coordinates
chr5:134525673-134535915:+
Coord C1 exon
chr5:134525673-134526011
Coord A exon
chr5:134526012-134535857
Coord C2 exon
chr5:134535858-134535915
Length
9846 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GGGCTTGCCTTTTGTTGCAGATG
3' ss Score
9.02
Exon sequences
Seq C1 exon
AACATACACAGGGGGTTGGTGAATGGTGCCGACCGCGGCCATCGCAGTTGGAGGCTATTTTTTGGGGGGGGTGAGTAGCGTCCATGGAGTTACTTTGCGCCCACTCCTAGCGGCACCGGCTTAGGTCCTGCGGGCCGACCGTCCCCGGCGGGGGGCGTGGGGCCTGGGACGCCGCGGGCCCGGCCGCCTCCCTCGCCGCGACCCCGGATGGATGCGCGCCCCCCGCCCTCCCGCGCCGGCCCCAGGAGCTCCCGGCTTCGGGAGCATCCTTCCCGCGCCGGTCCCTGCAGCGGCGCGTAGCCGAGGGCAGCGCCCGTCAGGGGGGCACCGCGGAGCAAG
Seq A exon
GTAAGATCCAGCCCCCGGCGGATGGGCCCTGCGCATCTCCACGACGTTATTTGGCGTTTTTGCAACAGATCTGCCAGCGCTCTTCGCTCCCTCGCTCTCTCTTGCTCGCTCGCTCCCTCTCTCTCCTGCTGGCTGCCTGTTCTAGGAAGCCAGCGCGGAGAGGGGGGGGATGCACAGCACAGGGGAGAGAGATTGCGCATGTTGGTCAGTCGTGTTTTAAAGAGTACAGTGCGGGGAGGCTGAGAGGGGCGCATGCAACAACAACTTTTGGAAGGGTGAGCTTGGCGACCTTCTTTATTAATGACTGCGGCAAAGCGCCCCCGGGCCGGCGAGGGGGCGCGGGCGGGCGGGGGCGCGCCAGGGCTGCAACTTCCCCGCGGGCTCCGGCCGGGCGTAGGGGCTGCGGCGGGAGATGGGTACGGTGGGGAGGTCGAGCGGCCCGGGCGGGGGCTCCGAGAACCTGGAGCTATCTGCCCTCCTGTCTCCCCGAGTTTCATTTTGTTGATACGCAGCACGTCCGGGCGCCGAACCGGGCTGAGCCGGTGCACATGACCTCGCGCTGGGCTCACGTGCAGCCGGTCCGGTCCCAGACACCTTCCGGGGGCCACCGCCTCCGCCCTGTCGCCCCCTCTCCCGGCCCGGTGCACGCGGGCGCTGCACGCGGGGGCAGCATGCTCGGCTCCTGGGGTTGGAGGCTCTGCACAAATTAGACAGTTTTTTTGGAGGGGCGGGGGACACCCTTTCCAGGTGAGTGTGGAGGGTGCGGAGCCTCGGCGCCAGGGGTGAGGACTGGGGTCGGGGGCAGCCTCCACCTCCGGGGCCGCGCGGTAGTCCAGCTGGGGAGAGGCGCTGGGAGAGTGGAAATGTACCGGCGGCGGCCGGAGCGGCGGGTGCGCGCCCGCGGGGCGACGGCAGGGGGCGTGGCCCTTGTTTACCTTCTCCCAACTCTGCCGGTTCGCGTCCCGCTTCAGGGACGGATCCGCAGTCCCCAGCCCTCTGCCTAGGGCCCTGCACCATGGGTGGTACCAGGAAGATGCCGGCTTGTGGCGGACCCCGTTTGGGACGCACACACCTGACTCTCAAATGAGTGACATTGCAGCCCCCGCCCCCACCTAGCGCTGCTGCAGTCCCTTTGCCGGATCCCCGGCCCCGCCCCGCCCCCGGCAGTGGCATCTTCCCGGCCTCACCTCCTTCCTCCCTCTCCCTCCCTTCTTCCCACCCACTCGCCTGCGCCTGCGGAGCGGCGCCCGCCCGCCTCCTCCCCGCCTGGGTGCAGACTTGTGGCTCCCCATGGTTTCTTCCCGCCCATCCCTGGGTCCTGAGACATCCTCTCCTCTCGGCCAAGGGACGAGAGGGGTCAACTTGGCGATTCGCAGCTGTTCTGCCAGAGGATGGGGTTGCCTGCGAGACAGCCAGGAAGGCTTCACTCTAGCTTCCAGAGGCCCAGCCCTGTCCCCTACTACACACAGCTACCACCCCACCCGCCCCTGGGGCTCGGCTGCCCTTCCCGGTGTCTCTTAAACCCCTCCCCCGACCTGGGTGTTAAGCCCACCCACCTCCCGGCGCCGCCCCCGGTCGAACAGCCTCTTGCCCTTCCTTCGCCTGGGCCGGAGCCCCCCGCAGCCTCCTCCGGCTCCTCCTCCCGGCTCCGGCGGTCGGAATCACGCCGGCGCGCCTCCAGCCTGCGGTCCCGCGGACTGCCTCCAGGGGCGGGCTGGAGGCGCGCGCAACTCCCCTCCCAATCCCCTCAGCCACTGCCGCTGGCCTGGGCACTTTTTTACCAGCTTGGCTGCTGGCCTCTTGCTGGAGGCTGGGGGAGGTGAAGGGTCACTGGGTGTCTTTGCCGTATGCCGAAGGCACACTGCGGCCGGCGATTCTGGTCTCTGCAGATTTCCAAACCTCGCCGCTGCGTCTAGCACCCCTGGGTCATCTTCTGCAGGATCCCGAGGCACAAAGTTGTATCCCGGGTCAGAGTTTGTAGGGGGTCATCGAGAGGTGTCATGTTTCCATTCAGAGCGGTTCCAAAGCGTCTAGGAAGGGGCTGAGTGGGACCTGCTGCCTTGCCTTTGTTGGAAGGAGGACCCCTGAGCTCTGATCCCAGACAGGCTGTCAGGACGCCCCCTTAGCATTTATGTTTGCAAACTGATTCCTGGACCTGGGAGGTGGTAGGGCCGCCTGGCCCCTCCTCTCGGAGTGGCATTAACTCCCTCCCTTCACTGGTAAAATTCCCAGTAGGACATTTGGCAAAAGGGCTCGGCATGGAGCTGCCAACCGGGCCTGGCTTTGTTTCCTGGGTTCCCAGGGCTTCTCCCCTACCCTGACTTTCTTTCTCACCTTAGGGCCCCAGATGAACGCACCGTCCGTCTTGTCCCATCTTCCTTAGACGGGCTGGGACTCGCAGAGCCATCTAACAAGCAGAGGAGGAAAATAACAACAGAATAACTATAAGGGGGAAGGAATGAGTAATAAAGCTGACCCAGGCAGGGAGGAGGGCTTTCATGTTTAAGAGATGCTATTTGCTTTTTGGGTCACAGGCTGCAAAAACAGGCTTTGATCCGAAGTGGGCGAATAATTTATTGAGCAAGTTTGCATGGTAGAGGAAGGGATGTTTGTTTGATCTGGAGCCCTCTAGGTTGCCCCAAGTGCTGTTGGCTGTTGTTTTGAGTGGAAAAGCATTTGGTTCTGCAGCAAATGCCTCACAGAGGGAAGTCCTCGCCCCAGGCAGCAGGACTTGCAGTGAATATTGGTTTTGAAATTGTTTGGCCAAGGGTCCCCCCATCACTTTTGGAGATGAAGTGTTTAAGGATAGAGTTGTTTGGGCTCAGGATGCAGCAAATGTTTCCAGAATGTTTTCCCGTCCAAAATGCTTTTCCTTTCCCTAAATTGCCTGGCTAAAGGGCCAGTAACAGTGGTCCAAGAGGTTGTCAGAAATCTCCACTTAGCTTTCATGGACTGGTGAGGTGGGACTGCCAGTCCCCAGGTCCTAGATGCACCACGGAGTATTGACACTGTATAGGCCCTGGACACTGACCCCCACATCCTTGAGGTTGGGAGGCAGGGTGTTCTGGCTCTAACCTAGTGTTCCTCTTAACAGGAAGGCAGTTGTCTTATGCTCATGACACAGGTAAGAGGCTTCTAGTCCAAATTCTTCATGGCACATGCAGCAGGCTTTTTGGGACCTCACAGTTCTCCCTTTAGGTTCTCTGATGGGGAGAACAGGTCAGAGTTGGGGAGCAGGATACCCCTGGCTTGCCCTGTCCTCCAGATAGGACCCTTACCATGTGGCTCAAAAGCTTACAATTGTAGGTCTGCTCAAAGCTCCTTTCAGACAGCCCATAGGAATCTAGAATACCCATACCCTGGAACTTGTAGGCCTGTACACTTCAGCCCACTGGAGATGGGGTACACCTTCTGGAGTCAGACAGCCTAGGTTTGAATCCTGGCTGTGCAGTTACCAACTGTCATAATGGCTCTATACCTCAGTTCCTTCTGTTACAAGGAGCACTTTCTGCAAATGGGATTAATAACAGTACCTATCTCATAGTGGATGTATAGAATAAGTGATTACCTAAAAAAGACTAAGCCCAAAGCAGGCATGTGATAAGCACGTGATTAGTATTAGTCATCCTTATTATACCTGGGGAGGGTCCCCGATGCAGCTTGGACCTTTGATCTCTCACCTTTAGGCTAGGCCAGAGAGCCAGCTCGCTTCTCTGCAGAAGGGATCAGAAGGATCCTGCAGGTGCCAATAGGCAGCCGATATGGGAGCGAGTAGACGGAGCTCTGCCCTCTCTGGGGCAAAGAGTAGGGTGAGAAGGTTCTGAAGAACAAAGTAGACAGAGCCTTTTCATTCTCCCACCATCCCCTTGGTACGTCCCCAGAACTGGTCTGGAGGGTGGGTGTGGCAGCGTCTTCAAGGGGAGCTGAGTCCCCTCTGGGACACTTGAAGTTGCAGACAGGCAATGGCTGGTGTTGCAGGAGGGTTCAGGCTCCTCTAGACTTGGAGAAGCAGGTCCAGGAAGCCGACTGGAGGATCCCAGGCAGCAGCCCTCTACTCTGTATACAAAATCATTTTTGTAACTGCAATTACTGTCCCTGAGAAGGCATTAAAGTTAATGAGAGATAGGAAAGAGTGGGGCTGTGACCCCGGTTTAAAGCGGTTTAAGAGTGTGCAGCTCTTGTTTTCTGAATGTCTGGCCTTCCCAACACAAGGAGGCTCTGAGGACAGGTTTTCCAGCCGAAATATCATTAAATTGTATTAGCATCTTATTACACACACGCCTTAGCGGTCTGCCTCAGACAGGGAGAGTTTTTGTTTCTCTTTGAAAGATTGTGTCTGGAATGGTAAATTGCCTGCTTGAAAGCCCTTTTTTCCCCTTTTTTTAAAGAAGAGGACGAAATCCTGCTGTGTGGTGGCAGGCAGGCCAGGCCTAGTGGCCCCTGGAGAGGAGAGGCTGGAGGCCAGGTTGGGGTGTTTTAACTGCCCAGGGAGTGGCTGCAGTGGCAGGCCTGAAAGGCCCACTGTTCCCAGGGTCAGCTGGAAGGGCGTTAATGGAGGCCCAGGGTGTTTATTTGAGTTTATTTGCAGAGAGGTCTTTAAAGGGGGCTGGCATTGGGCATTGGTGTTTTAAGTCCAGACCTGAGGCCCTCACTAAGGCCAACCACTAGTGCTGCCAAGAAAACATCTGCCACCAAATTGCTGCCCTATTACTGAGTTGACATTGATCATTAGCCAGGAGCCCAACCAAATAAAGCCTCCTGGAAAATGTGTGAGGTTAAGACGGGGAAGGCAGGCTGTGAAAACAAGGGCGAAATCTTGGGCCAGGGTGTTTGTTCCTGCAAGCCACAGGCAGGCCAGCTGGACTGTGTGGTCCCGACACTTCTTGGGGGAGGGAGCGAGAGCACACTCAGCACTCCCTAGTATGTCACTGGGGTTCTGGCTGGAGTCTAAATGGAATGCTCCTTACTCTTCATGGAATATACATTCCCAAGGAGAACGACATGCAACAAGTAGCTCAACAAGCACAGCTGGGATGGGTATTCCGTGGACACTGGGTGGTGAATTTCTTCAGATAGTGTGATGAGCATAGACTGACATGGGCCACACTGAAGCTTAAACCTGAAGGTTGAAAAGTCAGACATGCATAGACCACATAGAAGAATATTCCAAACAGAGTGGAGTACAGCGTGTGCACAGGGCTCGAAGTATGGAATATTTGGCTTGTTCAAAGGAATGAAAGGAGCCCAGCATGGCTAGAAGGTGGTGAGGAAGGGGATAGTGGTCAGTATGAAGCTGTCCAGGTGGCAGGGGCCAGATTGTGTAGGGTCTTGTGGTCAGGAGCTTAGGCTTTGTCTTTTGATCTATGAAGCCTTTGAAAGATTTTCTTAGGGGCATGATATGATCTGATTTATGCCTTTTAAAATTTTTATTTTGTTCTAATTTTTTTTAGAGATGGGGTCTTGCTGTGTTGCCCGGGCTTGCCTTGAACTCCTGGGCCCAAGTGATCCTCCTGCCTCTACCTCCCAAGTAGCTGGAACTACAGGTGCATATCACCATGTCCAGCTTCTGATTTATACCTTTTTTTTTTTGAGACAGAGTCCCACTCTGTTGTCCAGGCTGGAGGGCAATGGCACAATCTCGGCTCACTGCAACCTCTGTCTCCCAGGTTCAAGCAATTCTCTTGCCTCAGCCTCCAGAGTAGCTGAGATTACAGGCTTCCGCCACTAAGCCTGGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCACATTAGCCAGGCTGGTCTCGAATTCCTGACCTCTCAAGTGATCCACCCACTTTGGTCTCCCAAAGTGCTGGGAATATAAGGATGAGCCACCGTGCCTGGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTGTCACTCTGTCACCCAGGCTGGAGTGCAGTAGCATAATCACAGCTCACTGCAACCTCAACCTCCTGGCCTCCCACTTCAGCCCCTTCAGCAGCTGGGACCACAGGCACACGCCACCATGCCCAGCTAACTTTTGTATTTTTCATAGAGTCGGGGATTTGCCATGTTGCCCAGACTGATCTTGAACTCCTAAGCTCAAGTGAGCCACCTGCTTTGGCCTCCATAAGTGCTGGGATTACAGGTGTGAGTCACCGCACCCCGACTGATTTATGCTTTTTAAACATCACTCTGGCAGCTGTGTGGAGCCTGGACATGGGTGAATTGATACTGGAAGCTGGGAGATGAACAAGTGGTTCAGGCAAGAGATGAGATTGGCTTGGACCAGTGTGGTGATAGTAGGAAGAAAGTGGGTGTGTTCTGGAGGCAAAGCCTAGTGGACTTGGTGGGGCCGAGGATACAGAGAGGCTGTGGGCTTTTGCTTCATTGAGGGGACTCTACGACACCCACACTTTGAAGGAGAGCTTCCTACCTGTGTCTCCATGCTGGGGGTTGCATGAGAGGTGCCAATAGACTAGTGCAAATGGCAGGAAAATGAGATCTTTTCTTTCCTAAAGTCTCCTTTATAGGTAGGATTTCGGGAGCACTTTCTGTCCTCGAAAGCAAGTGCCTTGTGACACTGAAATCTTCTCCCACAGCAGACCTTGCTTTGGGGGAGATGGGGGAAGCCAGTGGAAAGGAAAAACCAGAGGCCAAGATCACATCTAAGCACCTCCACCCCCCAAGTGTGTTTGCAGTCCTGGATTTCAGCTTTGGGAAAGGAGTCCTCCCTGTCCCTCTTGCTGAGGTTGCGAGGAGGGTGATCCATGGGGCAAAAAGCTGACATAGTGCGGTCCCAGGCCTCATTAGCCACTGTGACAGTGGGAGCTCGCTGGAGCAAGGAGGCCTTTGGAAGACTTGGTTTAAAGGAAAGAAGCTGCACTCACAAAACAGTGGCTTCCTTCTCAAGCCTAGTTGTTATAACAATTAAGCCACCACAAAATCTGCTCCCTTAATAATAGCCTCCCATGGGACAGCCCTGACCCAGAATAATCCCTAGGCACTCTGGGGTGTTTTGTGGAGGACAGGGTTAGATGGGGAATTGGCTTGGTGCGGGGTGTAGGTCTGCATGCTGTCACCTGTTGGTCTCTGGGCAGTCAAGGAGTCCTTTCGAGGGCACCTTCCTTACTGTATAGGGTCACTGCCTCTTTTTTAGGAGCCCCTCCTCCAGGACTTTCCGACCTGGTCCAAGGCTGCCATGGTATTACTATCTGGCACCCATATGGATCTCTAGCCACTGTGCTGAGGGCTTTACACTGTTCTTATTTATTCTCACCAGCTGATTCTGGCCCACAGATGTGTTTAGTTTGGCCCTTTCAAAGTGTTGTAAAAATTCTGACTCAGTTGCCAACATTTTAAATTAAGGACATTTATGTAAAAAGCCAGTTCCAGTTTATCTCCTCTGGGAGGTATGTCTTTCCCAAGGTCCCTGGTCTATGAGGAGAGGAGCTAGGATTTGAACCCATCAACAACTTCTGCTTTTAATACTGTGGGAGATGCTGGCTCGGAAGTACCTTCTTTGCAGGAAATGAAGAGAAATGGAATTCGCTTACAGGATTGCAAAAGAAAATGGGTGGGTGCACTTTTAGCACCTCCCCCCCACTCCACCCACCGATGTCAGGACAAAGCTGGGTTGCGCTGGGCTGGGCTGAGCTGAGGAAGACGTAGGCTAGAATCAGGAGTCAGGATTCTGTCAGTCAGCCTTTGTCACACTCTCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATAAGGTCTTACTCTGTCGCCAAGGCTGGCGTGCAGTGGCACGATCATGGCTCACTGCAGCCTTGACCTCCCTGACTCAAGCTATCCTCTCACCTCAGCCTCCTGCATAGCTAGGACCTCAGGCATGTGCCACTACAACTGGCTAATTTTTAAATTTTTTGTAGAGATGAGTCCCCCTACGTTCCCCAGGCTGGTCTCGATCTCTTGGGCTCAAGAAATCCTCCAGCCCCGGCCTCCCAAAGTGCTGGGATTACAGGTGTCGCACCCTTGACACGCAGACTCTGGAAGGCAGTGAGGGTGGCAGCTGTGGGTTGCTGAGCTGTTTGTACTCTGCTGCGCAGAGACGGAGAAGTCAGAAGGTCAAGAGCACGGTCTCCTGAATCAAATACAGTCACTGACATCTTGGGCAGGTCACTTAACCTCTGAGCTTCAGTTTCCTCCTCTGCAAAAGGGAAGCAGCCATGATATATGCCTATAACAAAGGGCTGCTCTAGGGACTCGTTGAGGTCCCTGTGGACCCTGTGGAACCCCCTCCCGCTACTGTGAGCGCTTAGCAGTCTTAGCCATCCTTGTTCCTGCGTTTGTGCTGCTTGCACCACCAGTGTCCCTTGGAACCTCAGCCTCTGGAGGGCACTTTACCGGCATCTTTGAAGCTGGGCGGCAGGCAGCCTCAATGAGCCTTCCTGCCATCCTGGTCCTGCTGGTGGTGGGCACTGGGGTAGAGAGAAGCTCCCGGCTAAGATCAAGTCCAAGGCAGGAGGGCCATCCTGGTCAGCTGAGAGATCTGGGTGTTCACACCCACCTTAGAGAGCAGATGCTCACTAGTCTCTGCAGGGCTGCAGTAAGATGGTGGCATCCCAGGGCTCAGCAGGAATGGACTGGGGTTGGGGGCAGCTGGAGTTAGGTGCAGATGGGCTGGGCAGTGGGGCTTTCTCTCTACTGACACAGACTCCCTCCCTATCCTTTGCTGTGGGGAGTCAGTCAGGGAACACAGGGGAGCGTGCTCTGAACCCTGAGCCCCCAATGTGTTCCCACATTAGGACTCAGCCACAGGCGAGCTGTAAGACCCAGAGCAGGTTAACGCATCACCTGCTGTGCTCCCCTCCAAGGGGATGAGAGCAGGCTCTGCCACCTGGGACTCGTGAGGATTATAGGAAACAGTGGTGGGAAAACACTTTCAGCAGCCAGGAGCTGATGGAGGGTAAAAAGGCAGCTCAGCATGCGCCTGGGGATCAGACCTCATGGATTCAGTCCCATCTCAGCCACTTACTAGCAGGACAAGGTGCTGGCCTCACTTGTAAATGGAGCTCACAGCTCACCTGGTTAGGAACAGGAGATGATGTGGATAAAGGAAGACTCCGCGTGAGCTCAGTATGAGGCCCCTATGTGAGAGTTGTCCTTAATACCTTGAAGTTAGATGTTGCAGTTGAGGTAGAGTTTATTTGTACGTTTATCTGGGAAGGATGGTGGGGAGTAGGAGGGCAGGGTAGCCCAGCCCAGGACCAGTCACCCTGGGCCTGATGTGTCTCAGGGACCCAGCCTGGAGTGTCCCCCGCCTCTCCCCCGCTTCTGTACACTGCTGACCACCACTCGCAGGACTAGGCCCTCAGTGTTTTCTGTGCTGGCTTGTCCCTAACTTCCGACAGCATGGTCCTCCTGGAAGAATCAGTCTTGTTTGCTGTCCTCTACCCACCTACCTCCCTAGAGGACTTGTGGCTCAGGAGGCCTTTGCAGTGGTGGGCCTGAGTGTCCTTGGGTGGCAGCTGGGACTGGGCAGGTCATGGTCACTATTCAGTTTGGGCTTGCTGATGCCCCCATGTCCTCTCCCTCTACAACAGCTTTGGTTAGACCCTTGCTCAACCAAGGGCTCTGGGCTCAGGAGGTGGGAGATGCAGCCTTTTAGAATCCCAGGGCCTCTGTGGGTGGGTGGGAGAGGGTGGTGCTGGCAGAGAAGAAGGCTAGGACAGGGCTTTATTCTTATCTTTCTGCAGTGTCATAAGTGTGGGGAGGTTGGTTATGGGGTGATTTTCTGAGAGGTTGAGGATTTCCCAAGCCATCCGTGAGTATAATGGGCTTGCCTTTTGTTGCAG
Seq C2 exon
ATGGAAGAGAAGAGGCGAAAATACTCCATCAGCAGTGACAACTCTGACACCACTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000043143:ENST00000361895:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.956
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development