BtaINT0079573 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019277 | KCNH3
Description
potassium channel, voltage gated eag related subfamily H, member 3 [Source:HGNC Symbol;Acc:HGNC:6252]
Coordinates
chr5:30453561-30458227:-
Coord C1 exon
chr5:30458020-30458227
Coord A exon
chr5:30453843-30458019
Coord C2 exon
chr5:30453561-30453842
Length
4177 bp
Sequences
Splice sites
5' ss Seq
TTGGTACTG
5' ss Score
2.29
3' ss Seq
CCATCCTGCCCTCTCCCCAGGCT
3' ss Score
10.19
Exon sequences
Seq C1 exon
TACTTCGGGGCGCACCTGCTGAAGACAGTGCGACTCCTGCGGCTGCTTCGCCTGCTCCCCCGGCTGGACCGCTACTCGCAGTACAGCGCCGTGGTGCTGACCCTGCTCATGGCCGTGTTTGCCCTGCTCGCCCACTGGGTGGCCTGCGTCTGGTTCTACATTGGCCAGCGGGAAATTGAGAGCAGCGCCTCGGAGCTGCCCGAGATTG
Seq A exon
GTACTGGAGGCTGCTTGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTACATGTGCCCAAGGAATCTGTTCACTCAAGGGTGTGTGTGTCAGGGAAATGTGAGTTCAAGTGTGTGTCAGGGGATATCTGTGAGCTGATACAAGGTGTCAGAGAGATGTGTGCAAGCCTGCGTGTGTACATGCTCACAGCTGTGTGTCTGGGGCGTGTGTGCGAGTATGTGTGTGTGTGTGAGGGGGAGACGGGGGCTGGTGTGTGTGTGCAGAGGGGAGTGTGACAGAGCCTCCCCCTCAAGGCAGGCCCACTCTCCAGCAGCCCCTTATTGTGGAAAAAGCCTGGTAGGCTGCCTGGGAGAGGCTGTTCACCCATCGTGGCCTCCTCGTGGTCAAGCCTGTGGCACTTGCTTCTGTTCCCTGCCCACCTGGGAAGCCCACCCCTCTCAGGAGACCTCTCTCCCATGGTCTCCCATGGTCTCCCATGGTCTCCCATGATCAGGGGCTCCTCACATGCCTGGCACTTTCCCACCAATCTCTTGGAAGCTCATTCTCCACCACCTTGGCTCCTAAGGCCCCTTCCCCGCTCTTTTTGCCTCCGGCAGCACGTTCTCTCATCCGTGTCAGCCTCCCCCTGCCTGAAAAGCAGCCGTTCCCTGCGCCCCACCAGTGTCTTCACTCTCCTTCATTTCACCTCCACGCTCACAGCTCCTCCCTCTGCTTACCTCCCACTCACGACTTAACTCCTGCCAGGAGGGCTTCCACCCCCACTGCTCAACCCAAAATGTCACCCTGCAGGTCACAGTGACCTTCTGGGACCAAACCCTTATCCCCTTGAAGTCCCCAGAGCACCTGACCCTGCCAGCCACCTCTCTGCCCCAGGATGAGGCCTCCTCCTGCCCCGGGCTTTCCTCAGACCCCTCCTCCCCCACCTTGCTCTCCCTGGGCGACTCCACTGGCACCACTGCGTGAACATCTCAGCTTCCGTCCTCTCTCCAAACCATTCTGTTCCAAAACTGAACACACCTTCTTCCGCCCACGCCCTCCAGCCCTCTGGCAACTTCCTGGTAACTGGCCTTTAGCCCCGGTTTCCAGTCAGTGGGCAAGAGGCCAGCTGCTCGGACGCCCCCCTATGACTACCTGCTCCTTGGTGGGGTCAGTCACCCGGAGTCCAGGTTGGCTTTAGACACGTGCTCTGATCAGTGCCCGGGGACGAGGAGACTTCTGTGAATCCTCCCCCATTCACAAAGCCCACGGAGACTGGTGTGTAGCCCAGAGGCCCACTTGGATATTCCCCAAAGCTCTAGTTGCTGAGCACAGGAACCAGAATGTTCCAGACAGTGTCAGCTCCTTGGCACCTGCCCTTCCCAGAGGGAGGCTGTGGTGGAGGCAGCTCTGAGGTCAGAGGATTGGGAGATAGGTAATGGTGACGCAAAGCCCTGACCCCAAAGTCGTGTGTGTGTGCATTAGCGCTCAGTTGTGTCTGACTCTTTGTGACCCCATGGACTTTAGCCCACCAGGCTCCTCTGTCGGTGAAATTCTCCAGTCAAGAATACTGGAGTGGGTTGCCATTTCCTACTCCAAGGGATCTTCCCCACCCAAGGATTGAACCCAAGTCTCTTGAGACTCCTGCAAATCCCTGGGGTCAGTTGCCTTCCCCAGCAGGATCCAGACGCCTGAGTCTTGCGTCCACGTGAATTCTCCATTCTGACCACCTCCCAGGGCTTGCTGAGATGACATGAAGAGCACCTTTGGCTCCCAGAGGAGCTCTGAGCCCCTCCATGGAGAGCATGGGGGTTGTAGGGGGCTGTCTGACTGTTTTGCAGATCATACCTTGAACCCTAAGTTCCAGAGGGTTTTTCTGTTTGGGGCTGGTACTAGTTCACATTAGGAACTTCCCTGTAGCTCAAACAGTAAAGAATTTGCCTGAAGTTCAGGGGACCCGGGTTTGATCCCTGGGTCAGGAATCCTCTGGAGAAGGGAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGAAGCCTGGCAGGCTACAGTCTGTGGGGTCACAAAGAGTCGGACATGACTGAGCGACTAACACACACACTAGTTCACTCTAGGGGAGTTTCCAAGTCCTTCACAATTTCATCTGCCCCTTCCTTCTCCAGGGAAACTACCCTTAACTGGGTGGGACCTGCACCCAGACCTGCTGAAATCCACCCAGGCAGGGATGTCCGTTGGGGAGAGTGGCACTCCCTGCTGGCCCAGCTCTGTCTGGTGGGAGGTGCCTTCCCTTGGCCTCCTTGCCTTGGTTCTGGGCAGCTGCACTGCCCCGGGTGTGGACACAGAGTTCCGACCCCAGAGTCCCATTAGCCCAGTGGAGATGGGCTGGATTTTCAAAAGTTGGTGCTAAATACTGAGGGAGGTCGTTTGGGGACATCAGCCTCCAGAACAGCCTCTGCAGTTGACCCTTCACGAGCAGAGGCAGTATCCCACCACCAGCATCAGAGGCTGTGGACGCCCCAGGACCAAGACTACATGAGGAGGGGCTCCTCCCTTCATCCTGCTCCTTCTCCTGCCTCCAGCCCCCTCCCTCTCCCCCAGCAACTGGCTTCACCTCAGCGGCCCACCTAAATAACGACTGAAGAGCTCTGTACACTTCCCTGTGTTCTCACATCTCAAGTAACAGGAGGGCGAGTCCTCGCCTTGGCTCAGGATTTCACATATACCCCCAACTCCTCAGCCTGGAGCTTGCTCCCCAGCGTGGACCCCACATTCTAGCTAAGCTACTTGCCTGTACTTGCTGCCAGTTCTAGGTTAGTCCAGGCCTTTCCCTAGATCAGGAATGAGCCCCTCTCAGTTTCTTTATCTCAAAACCACCCATCCTCTGAGACCAAGCACCAGTGCCCCCTCTTTCAGGAAGTCGTCTAACTCTGGCCCATAGCATATGGGTTTGAGCCCCACCCCAGGGCCCTCAGGTGCTGGGTACATTTTTCCCCTGCAGGAAGCTCCTGGGGGTCACCTGGCTCCTGGCACATGTGTGAGGTTCCTGAATGAAGGGCTGGGGGTGAGAGGAGGGGTGTGAGGACCACAGGGGGCTGTGTGTGTGCTGTTAGGGTGAGTGTGGATTAGGGGTCTGGGGAGGGGTATGTGGAAAGGTGGGTCCAACCGCAGCCTGTGATCCTGAGCCCACCCTCTGGACCCCTGTGCTAGAGCTTCCCTCTCTCCCTGGCTTTCCGTGGCCCCCACCTCTGCCAGGACTCTTGGGGCCTCTGTGGACCCTGGGGACCTTCATCTAACACCTTAGAATTCCCACATCCCTCCAGGTGGACTGAGTGACTTTGGGCAGCTGTGGGCTCCTGAGAGACCCCAGTACGCAGTCCCACCCCCTCTAAAGTCTGACCAGAGAATGTGGGGTTGATGGGGAGACTGGGGCGATCTTCATTGTCCTCCCAGTGTCCCTGGCTGGCCTGTGTCTGTGTGTGTGCAGAGCCTCTGTGTTCATTACCTCTGTGCTCATGTCCATGCAGGTGTGTCCCTCTCCTACCTGGCTGTCAGTGTGCAAGCACCTGTGTGTCCTCGTCTCTCTCCCAAGTGTGCACAGGCATGGCTGTGCTCCTGGAACTGTGCTCACACGTGTGTGTCCTTGTCCTCTTGACTGCGTGGAGCACAACTATAGCCTCAATGGGGTATAGGCACACATCCGTGTTGCCGTGCCCGAGAACATGTGCACGAGGTTGGGTGGCGTGTGTGGTTGTGGGGCAGGATGGGACTGAATGGAGGATGGCTTTCCGGAGCTCAGAGAAAAAGTGAGAAGAGTCTAGGAGGATCAGGCAGAGGAGGGGGGCCTGGGAGTGAGGCTGGGGCTGGTACAGCGAGCCCACCAGCCCCTGTGCCCCCTCCAGCTGGGCTCACTGCCTGGTTTTAGTGCCACCGTGGGGAGGAGGGTGCAGCACTTCTCACTGCAGCCTCAGCACCTAGAGACACCGTCTGGGGAGATGACAGTCTCATCCTCATGGGCTTGTCTTGGTGAGGATCAAGGGAGGATGGGGTGTGCAAGGCTGGCAGAGGAGGGACACACCTGGAAAGAAGCATGAGGGTGGGTCTGCAGCCAGGTGCCCCCTCACCCCAGGGGAAGCAGCATGCACACGGTGGCCACAGTGCAGCAGTGCCATCCTGCCCTCTCCCCAG
Seq C2 exon
GCTGGCTGCAGGAGCTGGCCCGCCGACTGGAGACCCCCTACTACCTGGTGGGCCGGAGCCCTGCCGCAGGGAACAGCTCGGGCCAGAGTGACAACTGTAGCAGCAGCTTCGGCGAGGCCAACAGGACCGGGCCTGAGCTCCTGGGCGGCCCCTCACTGCGCAGCGCCTACATCACCTCCCTCTACTTCGCGCTCAGCAGCCTCACCAGCGTGGGCTTCGGCAACGTGTCCGCCAACACGGACACGGAGAAGATCTTCTCCATCTGCACCATGCTCATCGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019277:ENSBTAT00000025668:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(28.9=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(39.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]