RnoINT0077747 @ rn6
Intron Retention
Gene
ENSRNOG00000057315 | Kcnh3
Description
potassium voltage-gated channel subfamily H member 3 [Source:RGD Symbol;Acc:71070]
Coordinates
chr7:140897070-140900602:+
Coord C1 exon
chr7:140897070-140897277
Coord A exon
chr7:140897278-140900314
Coord C2 exon
chr7:140900315-140900602
Length
3037 bp
Sequences
Splice sites
5' ss Seq
TCGGTACTG
5' ss Score
4.52
3' ss Seq
TGCCCCATTCCGTTCCCCAGGCT
3' ss Score
7.76
Exon sequences
Seq C1 exon
TACGTTGGGGCTCACCTACTGAAGACCGTGCGGCTGCTTCGGCTGCTGCGCCTACTACCAAGACTGGACCGGTACTCTCAGTATAGCGCTGTTGTGCTCACCTTGCTCATGGCTGTGTTTGCCCTGCTCGCCCACTGGGTGGCCTGCGTTTGGTTCTACATCGGCCAGCAAGAGATTGAGAACAGCGAGTCAGAGCTGCCTGAGATCG
Seq A exon
GTACTGCGGGCTGAGAGGAGGGCTGCATGCACGCCGAGGGAAGGAAGCATACGGGTTTGAGCGCCCGCATGTGGGAATGTCCGAGACGGGGTGTGCGTGTAGGTGATGGCCACCACTAGGTGGGGACAGCCTGGTGACCGCCTCAGGGAGTCTCAGTCACCCCTAGTGTCCTCCTGGTGACCTTGGTCACATTTCTCAAGCTCTTCCCCAGCTCTGGGTGGGCAGGTAAAGACCTGCTGGCCTCCTGGTTTCTTTCCTTGAAGCTTGTCCCCACAGGGTCTCCGGGCCATTGCCCCATTTCGTATGTATGTCCTTCACTATGGTACCTGAATCCACATTCTCCCTGAACCTAAAGGCAGCCTTTTTATCCCAGCGTCTTCCCTCCTTCCTTTGCCCTCCACTGTTCGGCTCCTCCTTCCACCCACCAACTGGGTCTTAACTTTTGCTGAGCCCGTCCACTCTCGTCTCCTCCTCACCCACAAGGTTGCGGTGATTTTTCTGGGGCTGTAAGGCTATAGCCCCTGACTCTGCCCTCTTTCCAGCCCCTCCAAGTCTCAGAGACTGCAGATTGGTTTCATTGTGTCCCTCCTCCCTCCTCACAGTGGTTCCTGTCACCAGCCCCCTGGTATCACCATAAGGACATCGCGACTTTCACCCTTCCCATTCCTCCAACCCAACTGCAGCCATTTCTAACTTCCGGTGCATCCCAAACTGAGCACGCCTTTTCTTTCACACCCCTAGCCCTCTGTTTGCTTCTCAGTAACTGACATTTATTGAGTGTTCCTAGCTGCTTGGGTGGCTTCTCATGTCCGCCGACCTCAGTGGGGTCACTGACCATTCTTAGAACCTGCTCTGATCAGCTCCCCAAGAGATGATGAGGTGTACCTGTGAACCCTGTCCTTGCCGGGTGCATGGAGACAGGTGTGCCCAGAGGACCCACCTGGCTGCTCCCCTGAGTCCTCTAGTTGCCGAGCATGTGGAAACAGGGACACTCCAGCCGTGCCAGCTCCTTGGCACCCCCTTCCCAGGGGGAGTCTATAATGAGGCAGCTCTAGGGTCAGCTGCCACCCTGTGCCTGTCCCCGTCCCTATCTCTGGCTCACCTCCAAGTGGCCCTGAAGCACTAAATTCCCAGGTGCACCCCATTCTTTGCAATGGATCTAGATGCCCTTGGTCTTGAGTCCGCACAAGATGGTTTAACCAGTAAAGGTGCTGACGGCCAAGCCTGGTAGATCTGAGTCTGCTCCCTGGGCCCACATGGTAGGAGAGAACAGTCGGACTTCCACAAATTGTCCTCTGACCTTCACGTGCACACCAGGATGTGTGTACACAGAAAACGAAAGAAAGGAAAAGGGAAGGAAGGAAGGTTTAAAAAAAAAAAAAAACAAACCCTCCCTACCATTTAAGGTTGAGCACACATATCTCCTCTTCCAGGAAGCTGTTGAGCCCCTGCCCACTAAGCCTTAACTTTGACACCGCTCCTGGAGACCCTCTTCAGTTTCATTCCTATCCTTCAATATAACCTCTGCCCCTCTGCCCTTCTGCCCTCTGCCCCTCAGTCCCTCTGCCTCTCTGTCCCTCTGTCCCTCTGCACTCTGCCCCTCTGCCTCTCTGTCTCTCTGTCCCTCTGCCCTTCTGCCCTCTGCCCTCTGCCCCTCAGTCCCTCTGCCTCTCTGTCCCTCTGTCCCTCTGCACTCTGCCCCTCTGCCTCTCTGTCTCTCTGTCCCTCTGCCCTTCTGCCCTCTGCCCTCTGCCCCTCAGTCCCTCTGCCTCTCTGTCCCTCTGTCCCTCTGTCCTTCTGCCCCCTGCCCTTCTGCCCCTCTGCCCTTCTGCCCTCTGTCCCTCTGCCCCTGTCCCTCTGCCCTTCTGCCCTCTGCCCCTCTGCCCCTCTGTCCCTCTGTCCCTCTGTCTCTCTGTCCCTCTGCCCCTTTGCCCCTCTGCCCCTCTGTGGGAGCCCAGCCACTGTGTGCATTCAGCTGCTGAGGGAATGGATGTGAATTTCCCTCGACGACGCTGTGCAGAAACATTGGGGGAGTGTGACACAGGGTCTGTGTGTTGAGGGAGTGTGACACAGGGTCTGTGTGTTGGGGGCATGTGGCAGGGTCTGTGTGTTGAGGGAGTGTGACACGGGGTCTGTTTGTTGGGGGAGTGTGACACAGGGTCTGTGTGTTGGGGGAGTGTGGCAGGGTCTGTGTGTTGGGGACGTGTGGCAGGGTCTGTGTGTCAGCCCTCGGTACTGGCACTTGCTTCTCTTCTTTTCCATTGTCCAGAGAAGACTGGGAAGGTTCGGCCACCATCTAATGTGAGTGCAAGGAAGTCTGATGGTGTGTGTGTGGGTGTGAGTGTGCATACATAGATTCATCTCTGTGCAAGCATACCCCCATCCCTGCCTGTGTGTCAGCGTTCAGTCAACTGTGGTCACTAGCCTTTCAAGCACGCATAGGCCTTTATGGTACAAGTGGCCATGGTTGTGACTGGACATGTGTTTACATGTGTGCTTGCCTTCTCCACTGTGTGGGGCATGTGTGGTACCTCGGTGGCATATGTGTACACATCCACGTGGGTGTGTTGGGGACAGCATATGTGAGACTGGGTAGTTTGTGGTGTTGAGGGGCTGCGTGTGCCTGGATGGTCAGAGGCATCTGTGCTTGGACAAAGGAAAATCGTGTGAATGAATGGGGCAGAGGGTGTGTCCTCAGCCAGATGCCACCTCTACCCCAGCCTCTGCCTGGCCACCTACCTCCTGTTGGATGCATTCCGTGATATTGACAAGCAGCCTTGGAGAAGGTGTGGTTCCCCTTACTCTATCAGAGGCACCAATGGGATCAGCTGTGGAGCCTGGCAGTCTTTCTCCTGTGCTATCTTGCTGAGAGGTGAAGAGATGTTCTTGCAGAGAAGAGAAAGGTTGGACAGAAGCCACAGGCGTGGGCCTGCATTTGCAAGGGCTGCCCATTTTCAGGGCTGCCAGCTTAGTACACCTGGATCTGCAGAGTAGCAGAACACGTCCTGCTCTCTCAGTGCCCCATTCCGTTCCCCAG
Seq C2 exon
GCTGGCTGCAGGAGCTGGCACGCAGGCTGGAGACGCCCTATTACCTGGTGAGCCGGAGTCCAGATGGAGGGAACAGCTCTGGCCAGAGTGAAAACTGCAGTAGCAGTGGCGGCGGCAGCGAAGCCAACGGGACTGGGCTGGAGCTGCTGGGTGGCCCATCCCTACGCAGCGCCTACATCACCTCCTTGTACTTCGCGCTCAGCAGTCTCACCAGTGTGGGCTTCGGCAATGTGTCCGCTAACACAGACACTGAGAAGATTTTCTCCATCTGCACCATGCTTATTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057315:ENSRNOT00000086611:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.134
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(28.6=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(39.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]