BtaINT0079607 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016613 | KCNH6
Description
potassium channel, voltage gated eag related subfamily H, member 6 [Source:HGNC Symbol;Acc:HGNC:18862]
Coordinates
chr19:48491537-48497240:+
Coord C1 exon
chr19:48491537-48491767
Coord A exon
chr19:48491768-48497078
Coord C2 exon
chr19:48497079-48497240
Length
5311 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
CCTTCCCACGGTGTTCACAGCCT
3' ss Score
6.08
Exon sequences
Seq C1 exon
GTCGTAAGTTCCTGATCGCCAACGCTCAGATGGAGAACTGTGCCATCATTTACTGCAACGATGGCTTCTGCGAACTCTTCGGCTACTCCCGAGTGGAAGTGATGCAGAGACCGTGCACCTGCGACTTCCTCACAGGCCCCAACACCCCTCGCAGTGCCATGTCCCGCCTGGCGCAGGCCCTGCTGGGGGCCGAGGAGTGCAAGGTGGACATCCTCTACTACCGCAAGGATG
Seq A exon
GTGAGGCACCCTCAGACCACAGATTCCGCAAGGCAGGCTCGGCCCCTCTCTCATCCAGGCAGAGTGGTCATGGGAAGGGCACCGACCCCGGGGACCAAAGGGCCTGGATGAATCTTGTCTCCTCAGCTGTATGGAGAAAGTGCTGGACCCTGGGTGCAATGCCTTCCAAGGTCCTTTTCAGGGGCCAGGGACGAGGCTGAGCCACCAACTGGTCCTGGCCACATGCAGGGCCTCCCACACCATCGTCCCTCCCCCATGTCCCCGGTCTCCTGGCTGTCCACTCTGTCACTGTCAGCCCCAGCTGTCAGGCAGCTGGGACGGAAATTAACCTTTCCTCATCTCCGTCTGCTCTGGGGATTAGGGGAGGAGTCACCCCCTCAAGGCCTCTGGGGCCAGGCAAGGCATGGGGACGGCTGGCTTGAAAAGAGGGCTGGGTGAGGCTCAGGGACCCCAGCTCCTTGGGGAGACAGAGTCTGGAGTTTGTGCTGGCCCTGGAGGCTTGTCCAGTTTGGGATATTACTGCCAGCCCAAGCTACTGCAGACAGAACAGAAGCATAGGGCGGGGGCCGAGGATAAGAAATTCTGGAGCCCTTCAAGGCCCTCCCCTCAGTACTTCAGTGTCTCCACTGGGTCTGTGCAGAGAGGAAAGAGATGGGTGGGAATTAGGGTCCCCAAAGTCCCTTTGAAATCACCTGGATCAGTGGCCCTCTCAGCCTGCTTCTGCGTCAGAATTACCTGGAACTTGTTTTCCAAAACATACCTTCCCTAGAAAGGGGCTGACTCAGAGGTGTGAAATGAGGCCCAAACAGGTGTATTTGGGGAAATCCCCCTGGCAGTTTAGATGTTCTGTCAGGTTTAGGAACCACTGGCTTGGATTAATCCCTCGTTTCATGGGTGAAGAAACTGAGTCCCGAGAAAAAGAAAGAACTTGGCCAGGATTCTACTGCATGGGTCCCAGCTGGGACTGGACCCCAAGTCTCTGGATTCTTCCCTCAGATATATCTGGTCCGAATAACCCCAAGAGGGGTGAAAGGAACCCAACAGCCTCTGTGTTCCGAGGTGGAACTTTTGGGGAAGGAAGCCCAAGAGGGCCCTCCCTGGAGAAGAAAGCATGAGGGCCACTGGAGTGCAGGTGAAGGGCAGGCACCTTTGGACTGAGGCTGAAAGGTGCTCACGGCCTGGTTGCAGGGCCCTGGTGTGTGTGTGGAGCATGAACGTAAGTGTAAACCTGAGCATGTGTGTGTGTAAGGTGTTTGAGGTGCTTCTTGGGCAGGTCCTGGCTGTCCCTCTGGCTGTAGTGATTAGGGGACTAGGAAGAACCTGGCTTAGTTTGGGAGCACTCACAGGGTTAACAAAGTCAGAATATTTTTAAAAGCTGTGACCTCGCCTCCTCACATCATTGCAGAGAGGTGACAGTCAAAGGAGTGAGAAGGGTCCCAGGGGAACAGGATGGGACAGCAGGGAATGACGGAGGCCCACAGGTCCCTCTGTCCCTCTCCTTGACCTCAGAGCCCTACCTGGGCCTGAGAGGGGTAAGAGCCGATCATAGACGCCTAGTGATGTCAGCTCAGGGCTCTTAGGGTCTCCTCAGCACCCTAACTGTGCCTGGGCCAGGGGCCGAGGTCAAGGTCAAACCTTGACCCTCTGAGATCCTCAGGTCCTCAGAACCCTGTTGGCGTCTTCTAGCCATCAGAAGGAGCCCTAGAGACCTAGTCTTAGAGGTTTTCTGTGGGTGACAATGAAAAGTTACCCACATACCTGTGTGTTGTGCTTAGTCACTCAGTCATGTCCAACTCTTTGCAACCCCCTGGACTGTAGCCTGCCAGGCTCCTCTGTCTTCCACATTGCAGGCAGATTCTTTACCATCTGAGCTACCAGGGAAGCCCACCTTGACCCATTGTAGTCCAAGACCTTGAGCACCTTGGACCTACCTGAAATTGGTGTGAAACCTAGAAAGGGGAACCTTCTGGCCAGCATTCCCCTAAGAGAAGGATGTGATGCTCAGATAACTTATGTACACCCTGTGGTCCACTCTGACCATGTGATTGTTTTTTCTGTTTTGTTTTTATCATATTCACATGGCTCTTATAGCCTGCTGAAGGGCATTCCCTTCCTCAGGTCAATACCTCCTCTCCCCCATCTTCCATTGATTAGAGGAGGTGTCACCCCCCCCCCCCCACCTCCTACAGAATTCTAGCTGATTTATAATCCTCTTTTCCTCTAAAGGGGTAAACCACTGATAGTTCTCCAAGTTCAAGTAGAGAGTCTGTGGCCATACACCTCCACATTGTGCATCTGTGTAAAACTGTGCTCAAAGAGGCCAGGCCATTTGACAAAAATTACCCCATGAGACAGGGCTCAGAGACCCCTGAGAAACTGGCTCTGCTGCCATCTACCTTCACGAGGAAAAGTTAAGACCCTAACAGCTAGGAAGCATGGGGATGGCCGCAAGACTCGAGCCAATGAGAGTCTGGAGGGAGCCCTGGAGAACAGTCCTACGGCTGCGCCCCCTGGGGACCTGCCAGAGGGGCCCAGCCCCGCCTGCCTGCCTTGGCTGGATGTCTTCTCTGATGACCCCAAGCCAGAGAGTCCCCCAATCTCCAAGCCAGACTCGAGGAAGCCTGGGGCTCCTCCAGTCCTCAGCTCCAGTTCAGGAAGAAGGGTGTGGGCAGAGGTCTCGGCTCCCAGTGTCTTGTGTACACTTACCCACGAATGCCAGAGACACCCAGTGGGGAGGCAGGGTGGAGCAGCCGCACTCTTAGTGGCGGCCTTTGTGGCACCAGCTCTTCCCTGAGGGCTCACCACATACCGGATGCAGGGTGTGAAGAGATGGGGACAATAGACAATACTAGAGCCTCCAAGGGGAGGGGCGGGGACTATGAGAAACTGAAGGAAGGGGCGCATCTAGAGGCAGAGAAAAACCGGGAGCAGTGTGCTGTCCGGGGTAGGAGGGGGAGAGACGAGCCCACTGTCCAAGGTCAGAGAGGTGGGCCCCGAGAGGAAGCCCTGCAAGAGAGGGCGAGCAGAGCCTGTCGACCACCCTCCAGGATCAGGGCGAGGGCACAGGAACACTACCACTCCCGGGCACCCCTTAGGGTGACACACTCACCCACTTGTGGTCGCCCACACTCACTCGTGAGCAAGGACAGCTTGTGATGTGCTTAGTTGCTCAGTCATGTTCAACTCTTTGCGACCCCGTGGACTGTAGCCCACCAGGCTCCTCTGTCCATGAGGATTCTCCAGGTAAGAATACTGGAGTAGGTTGCCATGCCCTCCTCCAGGGAATCTTCCCAGCCCAGGGATCGAACCTAGGTCTCCCGCATCACAGGCAGATTCTTTACCATCTGAGCCACCAGGGAAGCCCAAGACAGCTTAGGGATCAGGAAAAGAATGCTCTGTTCTTGTCTGAATTCTCCTGTCTCCATCAGCGCGCAGGCAGTGAGTGTGAAGGTCAGGCAGGGGGTGTTACGTGAAGCTGCCCTCCAGCCCTCACTGCTCGGATGGGCTAGTCTTTGGTTCACTCTCAGCCTCAGTTTTCCAAAGATAGCATCAGTAGGTACAGGCTGGGGCTTGGCAGCCCCTAGAAGCATAGAGCCTGGAAGCCCTGCCCAGCTGTGCCAGCTCCCCACCAGGCCAGATTTCCGCAGTGCCAGAGAGAGTGAGGAGAGAGAATGGCCTTGCGGGTGCTGTTTCAGGCCACTGGCCAAGGAGGCTTCCTGGGTGGGTCCCAGCACCCAGGCCTTGCCATGCCCTGGGCTGACAAGTGTGCCAGGCTCTGGTCTGGGAAGCAGGCCCACAGCCCTGCAAGCCCAGGAGTGGGTCTCAGAGGCGTGTGGGCTGCCTCTCCTTGGTGTGGATATCTCCCCTGGGGCCAGCGCAGCAGCTGGCAGATGGCTGCCTGGTGCTTGGGAGTCCGGGAATCTGATCCGGGAGATTCTTGCTCCAGGGAGGAAGGTGGGAGGGAGGAGGTGGACAGCTCGGCTGCACCCCAGCACTGAGGGGGTGAGAAGGTACCAAGGGAAGGGTGCACCAGAGGGTGATCTGGGGAAGAGGGATTCTAATGGACCCCAAATTAGTAATAGCCTTCCACCCACTCACATTTACACTCATTCTTTCATTCACTCAGCTAACAACACCTTGGACAGGTCCTGGCCTCCAGCAAACAAGACAGACGAATCTGCCTTCTGCTAGTCATGTTTACCCGAGTCCCCCACCCTTAGCGTCCTTGGACGTGACACCCATCAACATTGAACTGAGGGACGTGGGATGACCGGGTCCCGTGGAGCAGGACGCACAGGGCATCCACCCAGCCTGCTGCCTGGCCTCTAGGGAACATGGCAGTTTCAGCTTGTTTTGTTCCACTCACCTATGGGAGAGGGAGCAAGGCCCTGGAGCAGAGAAAGAGGAACAAAAGGGCCAAGGGCTGGGTCTGGGCTGCCTGTGATGGCTGCATAAGCGGCAGGAGAGCCTGTCCCACCCCCACCCTGCCATCTATCTCCCGCTCCCTCTGCAGCCCCCAGGCCACTGGCCCACCTGCCCCACCCCTAGTCCCAGCACCTCTGCCTTGAGATGACAGGCCCCTTCCTGGTCTGGAGCTGCAGCCTGGCCCTCACTCCAGTGTCCTCGGCCCAGACGAGTCCCCATCCCTATCCAAACTGTTGTGTATGAGAGTGCAGGGCTCTCCACTCCATGGCCCCAGCCCTCCTTGATGCATGGCTCAGCCAGTCCTGGCAGGTCAGTTTCTCAGAAGCCCAGGCTCTGCAGAACAGGGGTCCGAGTATGCCCTCCAGGTCTCCATGCGCCATCATGGAGCTTAAGGCCTACTGCCAGCGGGCTCGGTGCCCAGCACTTGGTGTGTTCTCAGTGAGTTCCCTCCAGCATCAGGGGAGCAGGACATCTTTGGGGAACAAGAGTACAGGAGCTGAACCCAGGGCCAGCCAGAGCTACATGGGGGTAGGAGACCCAGCCTCACTTCCCCACTTAATCCACCCCCATCTGCTCAGCTTTAATTACAGCAGAAGCAAACCTCAAGGTTAAGCCCCGAGCTGAGGGCCGAGTGTGGACTTGGGCCCGAGGCTGCATTATCTCCTAATGAGGAGCTTAGCGGCTTTCTCCACCTCTGCTCTGTGGGTGGGGCCCTGCTGGGCAGTGTCACCAACAGCTCTGGTCACTCTGCGGGCCTCCTCCCCCACCCACGGCTGCTCTCAACTTGACCTTAACCCAGCCCCCTGCCTAGCTTCCCCAGGCCAGCTTCCTGCAGGAGAGGACCCCTCCGGTGACATGCTACCCTCCCTTCCCACGGTGTTCACAG
Seq C2 exon
CCTCCTGCTTCCGCTGCCTGGTGGATGTGGTGCCCGTGAAGAACGAGGACGGGGCGGTCATCATGTTCATCCTCAACTTCGAGGACCTGGCGCAGCTCCTGGCCAAGCGGGGGAGCCGCAGCCTGTCCCAGCGCCTGCTGCGACAGAGCTTCCTGGGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016613:ENSBTAT00000022102:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(70.1=96.2)
A:
NA
C2:
PF134261=PAS_9=PD(29.0=56.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development