DreINT0084860 @ danRer10
Intron Retention
Gene
ENSDARG00000001803 | kcnh6a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 6a [Source:ZFIN;Acc:ZDB-GENE-040702-5]
Coordinates
chr3:31637089-31644494:-
Coord C1 exon
chr3:31644264-31644494
Coord A exon
chr3:31637242-31644263
Coord C2 exon
chr3:31637089-31637241
Length
7022 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
TCTTTCTTTCCCTCTTTCAGGGA
3' ss Score
13.73
Exon sequences
Seq C1 exon
ATCGTAAATTCTTGATCGCAAACGCCCAGATGAAGAACTGTGGAATCATTTACTGCAATGAGGGCTTTTGTCAGATGTTTGGCTTCTCGCGGGCGGAGATCATGCAGCAGTCCTGCACGTGTCAGTTTCTGGTGGGGCCGGGCACTATGAAGAGCGCCCTGGGACAGCTGGCACAGGCTCTGCTCGGGTCAGAGGAGCGCAAAGTGGAGATCCTCTACTACTCTAAAGAAG
Seq A exon
GTATGCTCATTTTAGGATATCACTCGTATATTTACTTATATACCAAAAAAATGGCAAGAGATGTGTCCTCATGTTAGAACAAAACTCTTCTTTCACACTGACACACTTTGAGACAACCTTTTGGGATTGTGCTGATGCTCATGTCATAACTGTAGCAACCAATGCAGATACAGCAATCTTCGATGTTATGTACTGAAAAAAAGTTTATGTTTTTTTAAATCCCAAACATAAGAGGAAAACGGGTGTCTGTATAAAGGACCAAAAAGCAGAGTAGTTCAGTTCAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAATGCAGCAGCTTGCAGAGACCCAGTGCATGTCAGGATAAACAGTCAATAAACAGAATAGAGGCCCACAGGCAACGGGTCAGGACCAGGAGATAAAATCCAACAAAAAGGACGCGACCACATGAAGAGCTTGTATCATCAAAAGAGAGTCTTTTGGTCCAGAGCTGACATTTATAGGCTTGGGTCAAAGGAGAGGAAGAGGGTCAGATTCCCATAGGGCAGACCAACAGTACGGATACCTCAAGAGAACTGCACAGAGAGCACAGAAGTAGGACAGGACACAACACAACAAACCAGCAAGAGATCAGCAGTCAGTGTAGGGAACCCAGCACTCAAAGAGAATCAAAGCACCATCAGATATACTGTTGGACCAGCAATCAACAGAAATGAAAGGTAAGTGGGAGTAAATGTGTGAGTGTACTGATAGACAAAACCATACAAATAACTGTGTGGTGCCACAATGAGGAGAGAGAGCGCACAATGGAAATTTGTCAGAAAGGAAAGTAAAAATGCTGTCAGAAAAGAGAGAGAGAAAGCAAGGATTAAACCTGGGTTCTGAAACTGTGTTAGTGAAGTCTGAACTTTTGTGTTTCAATAGAAAATGCATTAACACTGAATCCTAAAACAACGATGATTTTTCACTAGCCTTCATTAGTGTTCATGAGCCTTACCTGAAAACTTTACTATGTTTTTGACCATTCATTTATACAAACAGGATGTCCAGGGAGCCTTAAAATGCAAAGTTTATCAAATCATAAAACAGATTATAGTGTATCTTGTCATAAATCTGTCATAAACATGATCGTCATGAGGCCATTATAAATGTGTTATGAATGTTGTAACAGCATCATTTGTATTTTAATAAACTTCAACTAGAGTGGCAAAAGTTGAATGTATCATTAAAATGTCAATGAATATTATTGACAGTTTAATAAAACTGGCTTTATAGAGAGTTAAACAGATATTGTTAGAGCGCAGATCAATAATGGTATAGATGCTGATAGCCTGGTAAGCTAGTGATGCTTGCAAGCTAAAGCTAGAAGCAGATGCCCGAGAAATTAGATACTAGTAGTAAATGTTGTGTGTAGATTTTGCTGTAAAATAGTATGAAGGGTATATTTACCTTTTGGGAAAAAAGATAGTAATGAATGGGAAAGTATTTTATGCAAAAAAATTAATTAGGAATCTTTTTGACAGAGCTCCAAACACAAAAACTAAAACAAATTTAGTTCCATTGAAAAAACATTGGAAGCACTTTCATGACACAATTCTGATGGCCTCATGACAATCATGCTTATGACAGCTTTTTGACAAGTTATGTTGTGTTGGTAATTTCAAATTGTCTTAACAAAGACATAAAAACCAATGGCACCTTTACTTTTAAGATAACATAACTGATTGAATGACTTAATTAGCTATATGCACAGAGACTTTTAATTTCAGTCAGCCAGCCCCAAGGCTTCCAGTGAATTGTCATCCCATACAAAATCAGCACATTTATCAGACCAAACAAGATGCACTGCATTAAAGGATTTTTCCACGCCATGTCTTTAAAAATATTTATTGATTTATTTTTAAAATTTTTTATTTATTATGGACACTCAATTGAGTACAATCATACAATATTTCAAGTTACATTTGAATTTCAATATGTGACCTTAAGTGATATACAATTTACATACATTATTGCCTCTCAGCAAGAAGGTCGCTGGTTTGAGCATCGGCTGGGTCAGTTGGCATTTCTGTGTAGAGTTTGCATGTTCTCCCCATGTTGTGTTGGTTTCCTCCGGGTGCTCCGTGTGCTATAGCTGAAATGTGCTATAGGTGAATTGGGTAAGCTAAATTGGCTGTAGTTAATGTGTGTGAATGAGTGTGTATGGATGTTTTCCAGTGATGGGTTGCAGTTGGATGGGCATCCGCTGCGTAAAGCATATGCTGGATAAGTTGGTGGTTCACTCCGCTGTGGCAACCCCAGATTAATAAAGGGACTAAGCTGAAAAGAAAATGAATGAATGAATGACATTCAGGGTGAGAACAGAATAATCTCAAAGGACCATCTTCATTATACACAAGGGGATAACACACAATACAGTATGAATACATATAACCATATATGTATATAAACATTAGCAATTAGCATATATTGTTGAGCATCTTCTACGTGTTTGTTTATAGCAACAAAATCAGGTCTTCTAACTGAAGTATATTCAGCCCATTTCCCAGGAATATATCCTTCTTTAAATGACCTTAAATACTGTTTTTAATGGAATTTTTGCGCTAGTCTGCTGCTAATGACGGCATCTGTGTCTCTTTTTACGCTTTAACAACCAAATAAATTCTTAAGTCTATTTAACTCAATGTAATATTGTAATTACATTAAAACATTGATGCTGTAAAAGGAACCTTATACAATTTTAAATAGTCACATTAAGCTTTCACCAGAAGTTCATCATTGGCTGAAAAACACAAGCTGTGCATATAGCCAAATGACAATTGTCATAAGCATGCATAAAAGCTCTTTCTTATTCATGATGTGTCGTGTCATGATAAGGAAGTTGTTATGAAAGACTTATGAACACCTCTTTTAAGCAAAGTGTTACCATCACGTCATGCCTGTTTTTTTTCTTTATTATGTGGTTTTGTGTGTAGAGTTTTAAGAAATGGAGCCATAGTTTCAGCCAGCATAGCATTAGCCTTTTGAAAAAGCTGTAATACAGAGACAAGCTGAAGGCCTGTCTGTCCGCCTGTCCCTCCGGCTCTCTCGTCATGTCTTTAGTCTCCTCCGACAGGAACAGATGAATAGAGCCACTGGCTTACTGCTCGCCTGTGTGCTTGCTTGTGTGTATATGGATGTAGGTGTGTGCGTGTGCACTCTCATAGCTCAGCTAGAAAGTAGACAGGTGTTCTTTCGGCCTGAAATCAGTGCACTGATAACATTACCAAGACAACAGAACTCAGGAGACTCACACCCCTATCACTAAACTAATGCACAGAGCTCAGATGCACACACTCACTCACACGTGCCGCCGTCCCTCTGTTCTCTTTATCCATCACATATTTCAGTGGATACAGCATCTCGATGTGTGTCACAGTTGAGCTGGAGACTGAACAGCACCTTTGTATGTGTGTGCGCGTGCATGTGTGTGTGTGTGAGAGAGGGCAGGGTCTATATTTAGAGTGGTTGATGGCCTGCTTTAGTCAAGAGCTGAGGGGGGTCTGGCTGATTTTAATCATGCTGTTCTCTCTCTAGTTTTTCTGTCCTCCTTCCCATCACTCCCTTCTCATTCCTGCGAATCTCCCTCACCACTCCGCTTGGTTTACATCAAGCGGTTTTACGATTTCTCATTTATCTCGTTAATTGTCTTTCTGTTCATTGTCGTGTCTGGGTTAAACGACCTGCACAGGATGCTTTGATTTCTTTTAGACGGCGTGTCGTGAAGATAGTTTATCTTTAAAAGCTCATAGTCAAAATATGAGTGACCTCTAAATGTTCCCGGTGCACGCGTGTTTGGCTATGAGGTTTGGAGAGAAAGGAGTTTAACCAATTGGAAGTGATCCTCAGGGGTCAATGCACTTATATGTGAAACGGATGTGGATGTTAAAGGGGTAGTTTTCTAAACATCTGCTTGTTATTTATTCACTCGGAGGTCGTCCATTTGTGCAAGTGTATTTTTCCCCTACATTAGAACATTTGACCCTTCTGTTGTTTTAAGGGTAAAATAATGACGTGTGACCATTTTAACTTTTGATGCGTCACAGTGTACAACCAAAGACACTGTGACTGACAAACACCCATCACATTGCACTCATACATAAAATGCATACTTATAAACATGGATCTTTGTTGCGTTATCTGTATTGTGCATGTGTGTGTTTGTGTAATGTGTTTAGGTTATTTTATTGTCAAAGTTAGCATTGTGTTTTTGCAAAATATCTCCATTTCATGTCAAACAATAGCCCATATCATCTTCCCATTCACACTGAAATAACCACAGACACATTTCCTTTTAAACATCATTTATTAACCAGACATAGAAAGAAAGATTACATACACTTACCAGTTTCCATTTCCTCAGCACCAAACCTGTTTACATTTCAAACGAAGACATTTATATAGGCTGTTTCTCAATATGCGTTCTTCAGCGGTCTTGCGTCCTCGTGTTCTCGTGCAACGTCTTCATCAGCTGCCCAAGTTCAGTTCCAATACTCAAGACCGCAAGTACGGAGGACGCGTGAATCTTCCCGGATGTGTTCTTGATATCGAGGACGCAACGATGCAGACTTGAGCACCGAACTCGCTCTGGAAGTCCCAGAAGTCATTGTGACAGGAGGTGGGAAGCGCAGCATTTTATCTAGATTTATTATTAAAGTTCAGAGATATGACTTATTTAAATGAAACGGTGAAAGTAAACATTACCATGAACATCTTAATAAAGGAATAAACACATTAAGGGTGTTTGTTTGCTGAAATTCGTATTAAAATCTGTTTTATTCATATTGTGCAACATATATTTATAATGTTTTTATGGAAAGTATATATTATGAAAAGGGAAAAACAATAAATCCTTGTATGAAGGCTGTAATGTTTAAATAATTTACCATTTAAAACACGTGAAGGTCACATGACCATCAGGAAGAACGCAGCATCTTAATTCTCAAAGGATGCGTTCTCTGACCTCGCGGTCTCCTGAATTCGTTCTTCCGAGGACACCTGGCAAGACCGGTCTCCACAAGAACACAAGTCTGTTCTCTGCATTCTTGGAATTGAGAAACAGCCCTAGTCTTTTCCCGCCTTCACTACAGAGCAGCCATTTTGGATAACATCATTCAAAATGGCTGGTCAGTAAATAAAAATCAGTTTTGTTGTTTATATTTGTATTGGTTATTTGTTGTGTTGTATTTTGAGTTTTGTATGCATATTTATTTACTTACATTACTTCAACTTTTGTTTATTGTTTTTTTTTTTTTTTTGTCTACATGTTAACCTACAACCTGTAAAGCGGTTTAACCCACGGGCGGAGCCAAAAATGTAAAATGGCCCCAAACCTTCACTCTGGGTGGGTAGTTGTAGGAGAAGGTTGTATTGTGTGAGAGATTGGTTAACAGATTTTGTTCAGGTCATAGCTTTGATTTAGCTGAACAATCCTGTAAAATACTTTGTAAATATTGTATAGTTTATTTTTCTTTATTGTTATTTTGTCACTTTCATCTTTTTGCTGGATTTTTTCTTCACTGTGTCAAATAAATCACTCTTCACTTTCACCAGCGGCTTCTGTGACACTTTTTGCCTCCATCCACCCGGTCAATGGTAACAGATGACTTTTTTAAAATCCACCATTAGAAATGAACCATTTTTTTAATTTCAAATTTTCTTGAACAAATATATACACATATAAGGTGTAATGATTGTCTTAGGGGTCAATTTTCACCTGCCAGCTATAATTTTTTTTTTTTTTACAAAACAACACCAGGCACACACCCCAACAAACAAACACACACAGAGACACACACCTATGCAGGTACGTTTAGCATTAGAAATCCTTTACTTTAGTTAAAAACATATATAATACTGATTAAATACTACACACTGACAAGACAAAATGAAGGCATTCTCAGAGTTTGTGATGAATGATGAGGTTGTTTCTTCATACAAAGTACATTTTAGGTTTGAAATTAAAATTTGAGAGTTAAAAAAACATATACAGGTGAAACTAATTTTCAATCTGTTGCTCCTAATGATGCATTGAGACCTTCTGAAGCAAATCAATGTGTAATGGATGCCACGAACACGCTCAGGACAGTTTGCTGATGTTGTAGGCTAAAAGTAATAATGTTGTGAATAATGCTCAGTTTCTTGCATAGAACAAAGACCTGATATAAGACTTTATTGGCATGGGTATTAGTGTTTGCTTTTGCCTTACACTTACCGGACACTTTATTAGGTACACCTTACTAGTACTGGGTTGGACCGCTTTTGCCTTCTGATGCCTTAATCATTCATGGCATAGATTCAACAAGATACTGGAAATTCCTCAGAGATTTTGGTCCATATTGACATGACAGCATCACGTAGTTGCTGCAGACTGTCGGCACGTCTATGATGCAAATCTCCTACCACATGCCAAAGGTGCACTATTGGATTGAGACTGGTGACTGTGAAGGCCATTTGAGTACAGTGACAATTGTCATGTAATGAAATAATGAAATATAATTGTACAATTTAAGGATGAGCTTTTAAACTATAAATATGTAGTATTCATAATACATATAATACATACAAGGTTGTTACATACATTTTGAGACATACAATTTCACAAAATGACACTGTAAGAATTATTAAGAAAGTGCTCCACTTTTTAAGAGATTTGTGTTTCCTCACAGTCAGGGACCTCGGACCCCCTGAACAGCAGCACCTGTGTGTGGGTGTCTCTTATTGTGTGTTTGTGTAAGTGTGAGTGTATTTGGACAGCTCACAGCCCTCACACTATTTATAACAGTTCTTCACGAAAACTAAACCAAAGTTCTGCTGTGTTTTGTATTCATGTTTATTCTCTGTCTTTCTTTCCCTCTTTCAG
Seq C2 exon
GGACTTGTAGGCCGTGTTTGATTGATGTCATTCCGGTAAAGAATGAGGAAGGAGTTGTGATCATGTTCATCCTAAACTTCCAGGAACTTTTAGACCCATCCATGAAGAAAGGTGGTCTGAAACAGCGCATGGCGAACAGCTGGCTGCGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001803:ENSDART00000134201:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(71.4=96.2)
A:
NA
C2:
PF134261=PAS_9=PD(27.6=55.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]