GgaINT1000141 @ galGal4
Intron Retention
Description
NA
Coordinates
chr27:2671860-2678612:+
Coord C1 exon
chr27:2671860-2672090
Coord A exon
chr27:2672091-2678456
Coord C2 exon
chr27:2678457-2678612
Length
6366 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
3' ss Seq
AGCCCCTCTCTCCACGGCAGCTT
3' ss Score
6.4
Exon sequences
Seq C1 exon
ACCGCAAGTTCCTGATCGCCAACGCTCAGATGGAGAACTGCGCCATCATCTACTGCAACGACGGCTTCTGCGAGATGTTTGGTTACTCACGTGTCGAGGTGATGCAGCGGCCCTGCACCTGCGACTTCCTCACCGGCCCCGACACCACCAAGAGCTCCATTGCACAGCTGACGCAGGCGCTGCTGGGCTCCGAGGAGTGCAAGCTGGAGATCCTCTACTACCGCAAAGACA
Seq A exon
GTAAGGGGCGCCTCTGGTGCACGTGGGGCAAAGCAGAGGTGGGGTGGGTGATCCTGGGGGTGTCACCCATCTCAGCTGGAAAATGAACCCGTGGAGTGGTTTGGGTTGGAAGGGACCTTAAGTACGACCCCTCCCCGTGCGCAGGGACAGCTCCCACTGGAGGAGCTTGGCCAGGGTCCCATCCAACCTGGCACCGAGCGTCTCCACGAATGGGGCATCCACTGTTCTCTTCTGTTGGCTGTCTGAGGTTGGGCAGGGGGTCTGCTGGCACCAGGGCACTGGGACTGCACTCGGGGCTTTGCCCCCCAGGGGTGGGAGCAGGGTGACCCCATGGTGGCCCCTGGCAGGTTGGACCCATCTGTGCCATGATTCGGGTGCTGGGACCTTAAGCAAGGGAAGGAGCCAGTGGATTATTTGGGGTCGTGGTTGCAAGCCTTTAGTGGTGTCTGAGAGTGACGGGAGCTCTCACAACATCCCTATGCTGTGAATGAGGATCCCATGGGATGCCATGGAGGATCCTTGGATGTGGTCCCCCGGTCTGTGCTCCATGATGGGGTCAGATCGTCGGCTCCAGCCCAGAGCCATCCGCGGGCGGGCATCGAGCAGGATGTGGCTGTGCGTGCACAGATGGAATTACACTAAGATGAAAATGAAGCTTTGATGGAAAATACTAGTGATTAGTTCTAATACTGCAGCAAGTTAAATAAATATTTAGTGCTTGACGTTGCCAAACAGCAGTGGCCAAGGCTGGCAGGGGAAGGGGGAATTCAGGAGATCAGATGCTTGTTGGAGGTAAAAAAATGTGAAGTATTTCCCTTTTCTTCAACCTGTGGCACTTCTCCATCACTTCAGATTGCATTGCTGGGGGTAGGCTTGGGAAAGGGGCTGCACCTTGCTGCTGTCAGCTCTGAGCACAGGGGATGGAGGAGGAAGAGCCAGGAAGGGAACACGCAGCAGGAAGCAGGCTGCCGGCCCGCGCCCTATCTCTGGGCAGGGATCAGCTGTCCTGGCCCTAATGCCAGCCCCTATCTCCTGGTGGGGCTGCGGGGTGGAGAAGGCTGGCTGGAGCCCAGTATGGTCGGGAAGGCACGAGGGGGAGCGGGCACACGCCGTCCCCTGCTGCTCCCTGCAGCCAACACACGGCTGTGACGAGGACAGCACCTGCAGCTCTAGGCAAGAAAGCAGCCCCAGCATATGCAAGCAGCATCCCCTTCCCACCAGCACCCAATAACTGGGGGTGATCCTGGCCCTGTGGCTGCAGCTGGCAGCTTCCCAAAGGATTTGGGACCACGTTCCATCCATCCCCCGCTGGCAGCACAATCCAGCTCCATCCTCCCCTGCTCGGAGTGCTCCCGACGTGGGATGCTCCCCGCTCCGCTGCTCTTCCCCTAGGCCATAGGAAATGCTCAGAGCTGCTTTCTTTCCTTTCTCTCTCTTCTTTTTTTTTAAATTTTATTTTATTAAGAAAAAAATAAAAGGGGGTAAAGAAAGGGAAAAAAACAAAAAAACAAAAAAACCACAACACGCAACGAAGCTCAGAAGAAAAGCCCTTCGTGGCTATTTTTAAACCCCACCAGCAATATGCCTTCCAATTGTCTCCCCCCAGCACTCAGCCTGCGCCCGCTCAGCCCATTATAAATGGGTCTTATCGGCAAAGAAAAGGCCTTCGCATTACAGGGAGCTGCTGCTTAATTAGACCGCGGAGGCTCCGAACCGCCCGTCCTCCTTTTCAGCGCGGCGGCACCAATCTCCAGGCTCGACCTGCTGTTTATTACTGCGGTACTCCGGGCTCTGCAGCTCGCGTGGTTGTTTCCTGGCTTTTGTGATTGCCAGAGATGATGTTATCCCCCAAAGCTGCCTGCCACGGCCCCCCCAGCAGCGCTAGGGAGGGATGAATGGAGGGGATGGGGGGCCTGGAGGGGGATGGGGCGCATGGAGGGGGTCAGGATGCCCACGCACAGCCAGGTTCCCATATGGGGTGTTGCTTCAAGGTGTTGCTTTGGGGTGTTGCTTTAGGGTGTGACAGCGCACCCCTGGGGGCAACAGCACTGCCCACTCCGCTCCAGGACACACACGCTGTCATTAACGTGCTGCTAATGATGAAAGGTGGAATGGAGGCATTAAGTGCTGGTAGGGGAAGACAAGACCCTCCCCACCATAGCAGACCCAAAACAGCTGTGGGAAGAGGGCAGAGCCCGGCTGCGGGCTGCGATGCTTCGGCCAACACCAGCAGCTCAGCCCTGAGTTTATTTCCATGTGGGTGCCCAAACCAAAGGGGTCAGGATCAGCCCCATAAAGAGCTGCCCCGGGTCATGGCCCCACCATGGCTGGGGCTGAACTGACACTGAAGGATCAGGGAGGGGTGTGGGAGCCCCCAGGGCTCCCCTTGCAGGGCCAGTGGCCACAAGTGCTGGGCACAGTGACATGGCACAGCCGGAGAGGCAGCAGCTGGCACCGAGCTGCACTGTTAATCTGTGTGGATGCTTATGAATATGGAAGGGGAGACGTGGGGACGAGGCAGCTGCTGGGACAGCCACCTGCTAACAGCCCTGCCGTCCCCATCCCTGTCCAGTGGTCACTGTGTCCAGAGCACAGGGCTCATCCCCTCAAGCACCGTTGGTGGCAGTTCCCTGTGGGTTTAGGGGTTGGGATCAGCCAGAGGAGTCCCTGCACAGGGCCACAGTTGGGATTTCCCTGGGGACACGGTGTCCCCAGTGAGGTGCCCTGCAGCTCCCTGTGTGGCTGGTGGCCAGGCAGGCATGGCTGTGGGGTGTCACTGTAGGTGTCGTGTCCCTGTGGCATGGAGCAAAGGGGACCTCCCTCTTGGGGCAGCACAACGAACCACAGCCCTATCCGTTTGCTTTGACCAAAATGTGTGGGGTTTTGGCCACGCTGGGGCTGTTTGCTCTTTGTTTCTTTAAGGGTCGCTCTCAGCAGATCTGAGCTGTGACCTCAGTAAGGGGACAGCCACCATAGCCTGACTCCATATGGGGATGTATAAACATCCCCAGCGCCGATGACAAACACTGCTGCCCTGGAGAGCTGGCCACATCCCTCCTTGGCACAGCTCCTCCAGCTCTGCCTGGGGATGGCGCAATCAGGGTTTAGAGCTGGAAGGGGCACATATCCCACCTCTGCAGCTCCCTGGAGCAGATGTCCCATGAACAGAGAGATGGACCCAGAGCATCCTCACCACCCTCAGGGATGTGCCGCTCTTTGAGTTTCCTAAAGCTAATTTATCCCTGGGTAGGAGCAAGGCCCAGCCCTCCTGTACATCCCAGGTGTTGGGATGGCTCCATCCCCATCCCATTTCCATCCCTACCCCCATCCCCATCCCATCCCCATCTCCATCCCCATCCCCATCCCCTCCATGCCCTTCCCACCCCTCTCCTCTGCTCCGTTATATAATGCCACTATAGATTTAGCCACTCTGCCATGAGACCCTGCAGATTAAATCTGTCAGCCGGGGGAGGGAGGTACGCAGAGCTCCCAGGGCAGATTAATAGCTCTCTTTTTTAATATTTATAACAATACTGTTTTGTGTCCAGCTCTCGGAAACCCCCATGTCCCGTTGATTAGTTTAATACCAATGATACAGACAAATGCATTAACCACTGGTGGCTGCGGAGGATAAGAGGGCCGGTGAGGGAGGGCTCCCACAATGACATTTTTAATGTTATTAAGTGCTTTTATCAAGGTCAGGAGACAGCATGGGTCGGGAAGCACAAAGCCTCCAACCCCGCTGGACACTGGGGTGATGTTGGGTTAAGAGAGGTTCAGTCCCAGCACAGGGTTTTGGGGAATGAGCTGTTTTCCAGCCCATAGAAACCCATCAGGACTTGGAGGTTGAGGTGCTCCAAAGCAGCACTCTCATTGACAAACAGTGGATAAATCCTTGTTTTCCAGCACAGCCGCTGCCGAGGGCCCAGGTACCACTTGGAAGGAGGATCCCAAGAACCTGTGCTGAGGAAGGGAAAGTAAATTCCAATGGAGAACCAAAGGCCAGCACTCATTGGCCCAATCCAACAGGAGCCCTCAGTCCCACTCCCATCCCGCTCATGGAGTAGGGTGAGGCGCAGGCAGGTTGTGAATGCCCCCAGGACTCCTTCAGGAGATCATTTGGCAGCTAGATAAAATTAGACGGATGGAGACAGATTAGCTGAACAGCTGAAGGGAAGAGACAGGCAGATGGATGGGGACAGGCGATCGAGGAACAGGGATGGCAGCTTGGGGTCAGGGGGCTCAGCCCACCCACACCGGGCACTGCAGCAGGGCTGGGGTGTGGGATGTACGGTACCCCACATCCCCGCTGCCCAAAGACCCCAAATGTGGGAGGATTTGGCTCTGTCTCAGGGGACACACTGTGCTGTCCTCTCCATCCCCAACACCCTGTCCTCCCATTGCCACTATCCCTTGCCCAGGTCCCAGCCAGGCACCAAGCTTCCAGCATGCAGGATGGATCCCAGCCCGGCTGGGACGATTCCCCCAATGCCAGCACCAGTCTGTGGGATCACAGCAGGCTCCAGCTGTCTTCCAGCCCCAACCCCAGCCCCAGCCGTGGCCCAGCTGCTCTTCGTGTCCCCAGTTTTCAGCTGTTCCATGTCAGCCTGGGGTTAACCCTTCCCATGCCAGCCATGGCTCAGGGTCTGTGTCCTCCCAGCAAAACAGAGGAGCTCAGCAGAGAAAAGGGAAGCAGTGAAGGGCTGCGGTGGGGCAAATCACATGAGCCCGGAGCAGGATCAGGATGGCCTTGCTGGGGAACGCACAGAACTGATGGCTGCCAGGTTTCTGATCCTTGGGACATTGGTGATGCTTCAATATCAGCTGCAGGGGAAAATAACCAAAACTTATGTTGTAACACAGCAAAGGAGAAAGCATCACAGCCCAACCTGCCGCAAGCAGAGCTGCAGCACCCTGGGGCTGGCACTGCATCCTCCTGCTGAGCCATGCCACCACTGTAGCACCATGCAGGACAGCTGGGCACTGCTCTGGTACCCACTCACCTTTCAGACCCCATATAAACACCCACGAAAGGAGGGGATGTGGGCTGGCTCCTCTCCACCCCCATTGGCCGTGGTGCCCCTCCAAAGGGCTTTGTTTGCTGAAAACAACCCCCCTCCTCCTCCCCACCTCCCGCTTTGAAGTGGATTTCCCCTCCGTGTGGTGAACAACGATGAAATAAAGGAAGGGAGGAAAAATCCCAGCTGCGGAGCCCTTTAAATGGATTGCGCCGTATCCATTTCTTCCCCTTCCTTGTGTGTGTGTGTGTGTCTGTGTCTGCGTGTGTGTGTGTGTGCGCCGCTGACGTCAGGGCAGATTTGGAAGTTGCCCGATGCCGGCCATCTGCTCCTGATTATGGGAGGCCCTGAGCTCTTTAAAATTACACGCAGCAAGGGCCTGAGCACGGCCGTGTATCCCCATGCTGCCGGCCCCGCTAATCCCCCGGCCCCGTTAATCACCGCGGGTGGAGGAAAGAGTGGGGTGGTTTGGCAGGGGTTGATGCAACGGTTCGGATCACCCCGAGTGCTGTTGGCAGGGTGAGGGTGCGATGCTGGCACTGGGCAGTGCTGGGGCTCTGTGGTACCCCACTGTCCTGGTGCTTCTGGGAGGTTTTGGGGGGGTTTTCAGGGGGATTTGGCCACGGGGATGCGGGCAGTGCCAACGCAACAGGAGGCGGCTCAAGGAAGGGCTCTGTATTGATTGCACTTTGGGGAGTGGCTGATGGAGGATTTTCCATAGGAATGAAGCTTGCAAGAGTGGGAGAATCCCTCTACACCCTCCTATTGCTGCCTGGGGAAGGGGCTGTGGGTGTTTTGGGGTCCCCCTGCTGCTTGCTGGCACCTGGCTGCAGCTCAGGCAGGAGCATGGAGCTGTGCTGTGCACCCTGCACAGCCCCATGCCCTGAGAGTGCCCTGGGGTCCTCCTGCAGCCCCCTCCTCACAGCTCCCTGTGCCCATCCCCATGCCTCAGTTTCCCCACGGTGCCACCCACTGCCCACAGACAGGAGGCGGCCGAACGCAGCCCCCAAACTGCTTGCTGATCGCAGGGCAATTAGCAGCAACTTGATTACAGTGTTTAATGAGGTTGAACTGGTACCTGGAAACTTTTGGAGTTCTTAATTACCCACTCCGTAATTGCTAGTCTAAAGTACATTAATATAAATGACTGTCTGGGATATAAAAAATAAGAGGCAGAATGCAACCCATGGGAGCGGGGCTGCAGCAGGAGACGGAGCTTTGCACCCCCTCCACTGCACGCACTGCGTGCACCCAATGGGAGTTTGACCCATTCAAAAAGAGTGTTCCACCAAAGCTTTGTGCCACGCGGGCCTCTGGGCCCCAATCTGAGCCCCTCTCTCCACGGCAG
Seq C2 exon
CTTCGTGTTTCCGGTGCCTGGTGGATGTGGTGCCGGTGAAGAACGAGGACGGCGTCGTCATCATGTTCATCCTCAACTTTGAGGACCTGGCGCAGCTCATCGCCAAGAGCTCCGGCCGCAGCCTGCATCACCGCCTGTCGCAGAGCTGGCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000505:ENSGALT00000031464:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PU(70.1=96.2)
A:
NA
C2:
PF134261=PAS_9=PD(29.0=58.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]