BtaINT0079617 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001899 | KCNH7
Description
potassium channel, voltage gated eag related subfamily H, member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr2:34145842-34152165:+
Coord C1 exon
chr2:34145842-34146105
Coord A exon
chr2:34146106-34151996
Coord C2 exon
chr2:34151997-34152165
Length
5891 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
CATCTTGCTGTTTCTCACAGATA
3' ss Score
9.72
Exon sequences
Seq C1 exon
ATTTTGGCAAAGGAAGCACTACAAATGACCCTGAAGACTCTGTAGATACAATAAGACACTACCAGAGTTCCAAAAAGCACTTTGAAGAGAAAAAAAGCAGATCTTCATCTTTCATCTCCTCCATTGATGATGAACAAAAGCCTCTCTTCTCAGGACTTGCTGATTCTCCTCCAGGAATAGGGAAAGCAACTGGACTTGATCTTGAAGAAACAGTGCCCACCTCAGGAAGAATTCACATAGATAAAAGAAGTCACTCTTGCAAAG
Seq A exon
GTAACCAAGTTTCTCAGGAATCAGTTTGTCTTATGTCAGTGCTAGTCACAAAATGCTGACTTTGTACAAATGAAAAGCATTCCACATGTTAGTCGAATCTGCAATTTCATGATGTATTTGCAAAGATCAAATCTTAGATCATCTACAAAGTGTCTGCAAGATTCTGGGATAGTGGTCATTATTCCCAATTATAGCATAATAGGTTCTGTGTGGTCAGTCAGGCCTAACACAGTGCCACATAGAACATTCTAGGAATGTCTTTTGTAGTGATTCCATGGGAGAGGGACCAATGAGTATTTGAAGAATTCTAACCCATTGATTCTTATATGTATCTTCTGTGTCCATGAAAATGAAAGCGTTAGTCGCCCAGTCATGTCCAACTCTGTGACCCTGTGGATTGTAGCCTGTCAGGTTCCCCTGTCCATGGAATTCTCCAGGCAAGAATACTGGAGTGGGTGGCCATTCCCTTCTCCTAGGCATCTTCCTGACCCAGAGATTGAACCTGGGTCTCCTGCATTGTAGGCAGATTCTTTACCATCTGAGCCACTGGGGAAGCCTTCTGTATCCATTCCCACCCCCAAACCTGTTTTTATAGCATTAAAGGCCAATTCAATCAAAATACAATAAATACTAAAAAAGAACTTCAGTTTACTGTGAATTATGAGAAAATGGGGATAAATGACCCTAAATAAAATATGCTTTTGATTCAACTCATTGGAACACATTTGTTTATTAGGGATACCCAAATATATGGGCTATGTTTTAGACAATATGCATGAACTGTGTAACTGCATTTAATAAATATATCCAGATTTGATGCTAAAGGATGGAAAACTCAGGAAAACTTGAGGACTACTACATGAAAGAACAATTAGCTAAGCATAACAGGATCTAGATCTACAGATCTTATTATCTCACGAAGAATATGTAAGAACAGGCATGGGCAGACTGCCTGGGTTCCAGGTCCAAGTCTGTGATATGCTCTCTACATGTCTTGACAGACCCTACTAAGACTCAGTTTGAACACCTTCAAAATAGGAATAATATGTTCTAACCAACTAGTCTGTTGTCATTATCAAACAAGATAATCGCATAAATTCAGTTCAGTTCAGTTCAGTTCAGTCGTGTCTGACTCTTTGTGACCCCATGAATCGCAGCACGCCAGGCCTCCCTGTTCATCACCAACTCCCGGAGTTCACTCAGACTCACGTCCATCAAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTTGTCCCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCGCGTGAGGTGGCCAAAGTACTGGAGTTTCAGTTTTAGCACCATTCCTTCCCCTGAAATAAAATCCCCAACTCTGTTTAGTATTTTCTCACAGTTTTTACTTTTTAACACTTTAATCTTTGAATATATTCCTAGACAGATAAAAACGTAGAGATGAAGAGAGTATAACAACAAAAAAAAAGAAACTATAACAAAAATGAGGGCAAAATAGGGTGTTCTTGAACTGGCAGGATACAAAATTATGGTACAGGGTAAGTAAATATTACTTATCATTGTCACCATTTTTCAAAGTGACTGTATCTGATAACAAAAGCTTTATTGAACCTAGGATGTTTAGGTTTTACATTTGTCCAGAGTTACTTTCCCTATTTTACCAAATCAGCTTTTGCCATGACCCCAAGTTGAAGTAAGCTCAGAATATATGCAAATGTTCTCTGGACAATCTAAAATCTTGATGAAGTGAATGAAAATAGTACCTCATTTATCACAATGGAAGAATGGAATATTAGATGTGATTACTAAATGTCCCATTTTAGTTATTTATGAAAACGGATTCTGGGAAGTGCTAAAAATAATAAAAGGTTGCATCATGGAAGTCAGGAGTTCTGAAGAACTTGCTGAACCATCCTACTGTCTTCAAAAGAGTGTAACTGAGTGGGCCTGATTTTTTTCAAAATATTTTTTGTTGTTTTCCTCTTGAGTTTTAAACTCTCAAGTGACAAGTTATTAAAGATATATTTGGGGGATTTTATTCAACTTGATGATGACTCTCACTGACAATGAATTCTCATGCCCTTCATCTTATGTTTTTCCTTGCCACTTCTTCCAATTATTTTTAATTAGTTATTTTACATGCACAATAAAAGATAGTATTCTATAAAATCTAAGTTAACATCTACAAATTTTAATTTTCAAAAATGTATAGTGACATCTCTGTTCAAACAAACAGTTGCCTTTAAAACTCATAGTTAAATATTCATGTCAATTGAATAGGCATAATTGATGCTACATAGAGTCAATCTGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAGAATCCCATGGGTAGAGGAGTCTGGTAGGCTGCAGTCCATGGGGTCGCGAAGAGTAGGACACGACTGAGCGACTTCGCTTTCACTTTTCACTTTCCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGCTCTTGCCTGGAGAATCCAGGGACGGGGAGCCTAGCGGGCTGCCGTCTATGGGGTCACACAGAGTCGGACAGGACTGAATCGACTTAGCAGGAGCATCAGCAGCAGCAGAGTCAGTCAGTGTGACACATGGTTAACCTAGATAATTAACATAACTAATCAGTGGAGAATTCTAAAACTTGATTCAATGCAAATTTCTTTCCCTAATAATTTTTTAAGGTGAAATACTGTGTGATTTTCAAGAATTTGAATAATGTGTAGGGTGTAACTGTAACTGTTGTGATTCATACTACTAAACCCCCAGAGACTTTAGTTTTATGTTTTATCGTCAATAGGAAATGCCACTTACATTTCTAGCATTTGTCATGCTGAATCCAACAGAGAAGCACCTTTGGACAGAACCGAAAAGAGAAAAATCAAACTAAATGCACTCTGATCCTGCTTAGATTGAGGTCAAAAGTTGACTCTAGGAAAATTGTGTACCCAGAACCAAATGAAAGTTTACTTTCTGTTCATCCATTTCCAGAAATGTGTCTTGCAACTATAGCAACATTTTCCAAGGCAACCGAGTGCAGATTCTTTCTGAGCTATATTTAGAAAGTATCTAAAAGGATGTTCATTTTGATTAAGACCACTAAGCAGGATCTCCCCTTTGCACTCTTTTTTTTTTTCCCATATTGCTGTTAAAACAAGCTAATCACACATATCCAGATTTTAATAAAAGAGTAAATTATAATCAAGGAAGACTTTACCCAATAGTTTACGAGTATTCTTTTTTGCTAAGAGATTATCAGTTTTTTTCTTGAGCACTGAAGAAAAAATAAAATCTTATATAATTTATTGCAAGTAATTCACCACTGTTATTTAAAAATCAATATCTTATATATGATTTGAGAATGAGAGAGCTATTAGGCATAAGTGGAAATACTGTAAGCTTTCTCAGCACAAAACTTCTGAGTATAATATGTAACTTCCATCCTGTCAGTTTTATTGTTTTTGTTTTATTGTCTAGCAAAAGGCTAGACAGGGGGAAACATTGGCATCATCCAGCCATTTATATGAGTGTTCTATTTGTTTGGCATTACTTCTCCAAAAGTGAAAACCTAGTATACTAAAACATTATATTATTGTTTTGCATTTTAAAGTCACATGTGTGTGAATAAGAAATCATACTTTTCAGTGAAAATTGCTGAAATATTACTTAAAAGTTCAGCCATAACATTTTTGATGTTCAGTTTCATAGGAAATTACATATTGTCACTTTAGAAAACAAAACAGCAGTTGTATCCGACTCTGGGATCCCATGGACTGTAGCCCACCAGGCTCCTCTTTCCATGGAATTCTCCAGGCAAGAGTAATGGAGTGGGTTGCCATTTCCTCCTCCAGGAGATCTTCCTGACCCAGGGATCAAGCCCAGGTCTCCTGCATTGCAGGCAGATTCTTTACCAACTGAGCTACTAAGGAAGCCCCTTCCATAGAATAAAGAAGGCTTTAATTTCCTCTGAGGTCTGTTAACCATTTCAATAGTATAGGGAACCCTGACCTTATATTTTCCTATTACCATCTTTGGGTGTGCTAATCCCTTTGTTAGAGCTTCACCCAAGTGAAGCAGAAATTGTTGGCACCTCATTAGAGATTTCTATGCATTCAAAGATAAAAGTATAGTGATAGAAAAACCATGAAGAAAAGGTACAGAAATTGTGTCTGCTACCTGTGGATAGGGGGTACTTCTGAAGAAACTGTAGGAAAGGAAGGGATTTCAAGAAACCCTACAAATCCTGTTCCTTGTTTCTAGAATCATAGTTAATTCTCCCTAAATGGGTTACTTTCTATCCAATTTTTAAAATAGCCAAAGATATAAATTCCATAACTTTACATAACTTTTGTCAGTGTTTAATCATAAATACTTGTCCAAAAGAAAAAACAAAAGTCATTCTATCAAAGCAAAATCACTTTTTGTTATTTAAGTCTATTTCCATGTGAAAATGAAGTCAGTCTTTTTTTCTACCAGTCCTCTGAGTGAGGAAAACATACTCCTTCTTTCTCTCTGAAATAAACTCCCAACTCCACCAGTACTGGATTGGTGTGCCATGTGCTCAGTCATGTCCAACTCTTTGAGACCCTATGGACTGTAGGCTTCCAGCCTCCTCTGTCCATGAGATTTTCTAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCTAATGCTCTTCCTGACCCAGAGATCAGATCAGCTTCTCATGTGTCTCCTGCACTGCATGTGTATTTTTTACCCGCTGAGCCACCAGGGAAGCCCCAACTAGTATTTTTTCATGGGTTCTATTTCCCAAACTTTCAATTGTTTTAAGCACTTCTTAGATACATGAAATGCAGAGGGTAAGAAAGCATAGCAGAAGTCATCAAAAGTATATTACAGAAATGAGAGGGAAAATAAGATATTATATTTGCCCTCAGATATTGACAACTTGCAAATACAGATTGTTAGAGAAACAGTAAATTAAATGAGGTTCAGAAAATGAACCTCTGTAAGAAAAATGATTAAAACCTTTTTAGACTGAATTCCTCAAGGGCAGGGCCTATGTCTTCTTCATCTCTAACTCCTCTACAATTAGCAAAGTGTCTGGCACATAACAGACATGCAGACCATCTGAAAAGTGGGCTTGAACAGATAAGTGATATGTTTTACAGTATAGTAACATAAAAATATTTTAAATAAAAGAGCCCCAAGGGAATATATTGAAATTTAATGTGCATAAATTAAAGGACAGTACAGAAGGAGCTACAGGAAAACATAAAAACATGAAAGAATGTCACGGGACATTAGGACAAAGAGACTTTAGGCCTCTTCCCATCTTTAATGGCTCATTGTTCTTTGGGTCTACTTTGAGTTTAGTTGGTCTAAGGGAATCCTGAAGATCATCACTTCCCCATGGCTCTCTCTTCTCGAACCCACTCTGAATCATTAAGTATGCAAATTATTCTGTGGGAAAGAGCCCTAAAATCTTCAATCTGAGGTGAACCAGTACATACATATGGTGCTGTTTCTCCCCAAATGTAAAAGCTCAAAGTCTGTTCTCTTACTAGAGTTTAGGGTTGGCCATCCATGTTTCCCCTTAGCACAAAATAGAAGGGGAAATTGTACTGAAGACTCATAACCAGCTGTGTGGAAATAGGTGGGGGAGGCGGCAGTCAGGATCAGGGTGGATGGGAGTCAGCTACCTATTGGTTGTAGTTGCTCGACGGGTCCCTGAGCCACTATGGTTCTGTCTTCCAGTTAAATTTCAAGGTCCCTTCCTGCTTGTATTGTGGATGTCTCTGTAGCTATAAATGGGCACCCAAAGAAGCTGACATCCATCTTGCTGTTTCTCACAG
Seq C2 exon
ATATCACTGACACAAGAAGCTGGGAAAGAGAAAATGCTGGAACTCAGGCTGATGAGTCTAGTCCCTCAGCACTTCAGCGAGCTGCCTGGGGAGTCTCTGAAACCGAAAGCGACCTCACCTATGGAGAAGTGGAGCAAAGATTAGATTTGCTTCAGGAACAGCTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001899:ENSBTAT00000002469:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.787 A=NA C2=0.649
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]