RnoINT0077790 @ rn6
Intron Retention
Gene
ENSRNOG00000007528 | Kcnh7
Description
potassium voltage-gated channel subfamily H member 7 [Source:RGD Symbol;Acc:621112]
Coordinates
chr3:48683917-48689675:-
Coord C1 exon
chr3:48689412-48689675
Coord A exon
chr3:48684086-48689411
Coord C2 exon
chr3:48683917-48684085
Length
5326 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGA
5' ss Score
9.78
3' ss Seq
CTCTTTGCTTTTTCCCACAGATA
3' ss Score
12.94
Exon sequences
Seq C1 exon
ATTTTAGCAAAGAAAACAGTGCAAATGACGCTGACGATTCCACAGATACAATAAGACGTTATCAGAGTTCCAAGAAGCACTTCGAAGAGAAGAAAAGCAGATCGTCTTCCTTTATCTCCTCCATCGATGATGAGCAAAAGCCGCTCTTCCTGGGAACAGTAGATTCCACTCCAAGAATGGTGAAAGCAAGCAGGCACCATGGTGAAGAAGCAGCGCCCCCCTCAGGAAGAATTCACACAGATAAAAGGAGTCACTCCTGCAAAG
Seq A exon
GTACGAGCATCAGTGGGCTCTCATCATTGTGGGGTGGGAAAGGGTTGCTTTTCGAAACCATGAACTGCACAAGCCCAGGTTCTTCTAACCCTTTCTATCCATGAAATGTTCTAAAAATCTTCAGGCTCGACATCATGACTCAACTGTCTGCATAATTTTACATCGTTCCCCAAAAACTTTTAGTTTAGAAATTTTTTCATTTGATTGATTGATTGATGATTGATTGATTGATTTTGCTTGGTTGGTTGGTTGCTTAGTTTTTGTTGTTGTTTTGGTTTGGTTTGGTTTGAGTTTTTTGTTTGTTTGTTTTTTTTTTCATTTGTTTGTTTTTATGGCCAACCAGACTTCGTGTAAGACTAAGCACAATGCTATGGGCAACTTATTGAATCCATCTGATTACAGGAAGAGAGGATCCGAGGCCATTTACTAACGGTTAGCAAGTCAGGGTTTTTGGTTGATCGGTTTAGTTTTGGTTTTTCAAGACAGGGATTCTCTGTATAGCCCTGACTCTCCTGGAACTCACTTTGTAAACCAGGATGGCCCTTGAACTCCTGAAGATCTGCCCGCCTCTGCCTCCCCAGTGCTGGGATTAAAATTTGTGAGTCCCCACCACCACCATGCAAAAAGGGAAACTTGCATATGCACCTCTCCACCAATTTCTTAACTTTAGCTGGATAACATTACACTGTGAAAGCTCCGTCCAATTAGTGCTGTAAATCAAGCAGTGTTGCATTTTACTGAGAATTATAAGGAAGAGGAATGTCTTGAAGTAAAATATAGTCTTGCAAACATTCTCATTTCACATTTCTCATGAAGAGAATAACCGAGGGTACAAGTTTTTTTGTAGAAAATACACAAAAGCTGAGCAATATGCTTGATTTTTCAGATTTCATGTAAAGGAGAGAAAAATAAGAATACTTTAAACTGCTTCTTGGAAGAACAATTAGAAAATTGTACCAGATTGATACTATTTAATCTAAATATCTATATATCTATATGTCTATATATCTATATATCTATATATCTATATATCTAGCCACATCATTCTATTTAAGTGAACCTAGTGATGTGGGTCAGAAGGCCTGGATTCTAAAAACAACTTTGCCACCCTTTATGACCTTGAGTAAAGTATTAGGCCAACCTCGGGACCCATGTTATGCATCTTTAAGAAAAAATAATGTCATCTAACCAACTGATTATGATTACTAAACAATATAACCTGTAACTAAATTTTCTAGAATCAAATCTTAAGCTTTATTTAATATTTTCTACTAGGTCTTATTTTCCGACTCTTTACTTATTTAATTTACATGTGAAAATTAAGTGAGCATCACACAGAACTGGAGAGATGGCTTAGTGTTTAATAATATCTGCTGCTCTTGCAGGGGAGCTGGACTTGGTTCTAAGCTCCTAGGTCCATTTAGGGCTACACAAATGGATGGAAATGTAGTTCCAGGGGTCTAATGACCTCTTCTTGCTTATACATGCACATGGTACACATACATATATGCTTACAAATAAATACCACACACATATATGCTTACAATACCACACACATATATGCTTATAAATAAAAATAAATATATATCTTTAAAGACAGTGTCACAAAACATCAAAAAGATTATAACAAACATGAAGAACACCAGAATGTTTTGCTTGGGAAGATGAAAAAGTATAACACTGAGAGGCTAAGTACTAGCTATCACCACCACTTCATGGGAATATTAAACAACAAAATGTCGTTGAGTACCAAATGGTTAGGTACCAGAGCTCCTGGCCCTATCGTGTCACATCAGCCTGTCATGACTTTACATGGCAATAAGCTAAGAATACATGCACATGTCCGCTAGACAACCTAAAATCTTGATGAAGTGCATGGAAATAGTACCTCATTCATCACAGTGGAAGAATAGAATATTAGATGTGATTATCAAATACCTCGTTTTAGTTATTTATGAAAATGGATTCTGGGTAGTACTAAAAATAGAAACAGGTTGTATCCTGGAAGTCAAAGTTCTAAAAAACTGACTGAACAATATCTGCTATGTGCAAAATTATTCGAGGATGATTTTTGTAAAACCATGTTTTCTTCTTAAATATTAGGCTCTCAAGTGACAAGTCATTAAAGATATTTTTTGAGATTTTTGACTTTATAATGATTCTCCCTGACAGTGAATTCAAATGCCCTTCATTTTATAAATCTCACTTCTTCCAACTTTTAATTAACTCTTCCCTCTGCCCAACAAATTACATTTTCAAATGATTTTAGCATCTCCAAATATCCGTGTTTTCAAAAATGTATAAAGTAATCCGCATTCAAGTCATGAATAATTATCTTGATAATGCACAGCTAAATATGCATGTCTAGCGACAAAGGAAATGAACAACCTAAAGCTTCAGCGAAGATGACATGCGTTAACATGGCTAATCATTATAATTAACCAATGAGGAATTTAAAAACTTAATTCACGCAAAGATCAATCCCCAGTACCAAAGTGCAATACCATATAATAATGATGAACTCCAATATGCAAGTATAGAGATAGATATGGGCATAGATATAGTTACTGCAGGCACTGGACTCTAACAGTCTAGTTTCATTATCAATAGGCACCTTCACTCCCTTGTATTCTGGCACTTGTCACCCCAAAGAAGGACTCATTTAAGCAAAACTTAAAACAGAGGAAAAATTAACATGACTTTGGCCTTCCTGATGCTGAGGTCAAATGTATACCGTGGTGAAATCGTGAACCCTGAAAATGAAGGTTTACCCTCTGTTCATCCATTTGCAGAAAAGTGTCTTGCAACTATAGCAACATTTTCCAAGGCAACCAAGTGCAGATACTGTCTGAGCTATTTTTAGAAGGTGTCTACAAGGATGCTCATTTGATTACGACGACTAACCAGGGTTTCTCTCTCTTTGAACTCTTTATTTCTCATTCCACCATTAACACAAGTTAATCACACATCTCTAGATTTCAATTAAAAATTAAATTATAATCAAGGAAGCCTAGGTCTCACAGTACATGTTTTATTCATCTCTGCTAAGATAATCTGTTTCTTCTTAAGGGTCAAAGAAAAAAGTGCTATTCTTCATAATTTATCGCATGCGATTCGTGGCATTTAAAAAAAATCAATGTGTTACATGATCATGAAATGAGGGAACTGTTAAGCAGAGGCAGCAGTTCAATGAGGTTTCGGGCACAAAGCTCATGAGGATGTTACATCCCATTTCCAATGCTGTCAGTTCTCGCTCTCTCTAAAGGAAGTGCTTCCTGTATGAATGGCAAATTTAGAACAAACTGGGGACGGTCCTGGCAGCGAGGTCAGCTCAGTGCATGCCCTCACGCTTGGACATCACACCAACCAGAGTAGAGAATCTAGTTTTACTAAGACACTATGCTGGGCCCTTGCATTGCAATTGGTCCAAATGTCTATAAAAAGAAATAACACTTCTCTGGAAATCTGCAATTTCACTTTTCACTTCTGTATTCTCATTTCTCCCTGTCTGATAAAAGTAAAAAAAAAATAATAAATAATAAAAAAAATAAATAAAACAAAACATACTCTATCACCAAATACCAAGATCCTGCCCCGACTAAAGTGCCATAATCAGGAGCCTTCTCTGGATGTCACAGGGAAGTCTCTGAGGTCTGTTAGCCATTCTACAAAACAAGGAACCTGGCCTTGGTTTCCCCATGCTGTCCTTGGTTATGATCATTTCTTCTTTATATCCACCCCTGTTGAGATAGAAATAAAAAGCTCATCCTTAGAGACATTTTTATGCATTTAATGATAAAAGATAGGGAGCGAAAACCCTTGGAAGAGAACATATTTTTTGTCACCTGCCTAGAAAAGGGGTGTACAACACATCCCCCATTGTGCCTTCAGAGAAGCCGTGGAAAGGAAGTCCCACTACTCTGTTTCCTATTTCTAGGATCATAGCTAATCCTGCCCAAATTTAGTTACTTTCCATCCAGTTTTTTTTTAAATCGCTAAGGCTGTAAATTCCATATCTTTATGTTATAACTTTCTTTGCCATTTAATCATAGCTACCTGTCAAGACTTTCTTTCAAAATGTCTATCAAAACCCAATCACGTTCTATAACGCAAAGCTACTTCTGTGGAAAAGCTAAGATCCATCTGAGGTGTCTTTTTCCTGCCCCCAGCCCTCCCATGACAAATTTGCTCTTTTTTTTTAATCTCTGAGATAACCTCCTGAATCCAGTAAACTATCTTTATTCATTTTGTAGAAGAAAGTGGGTTTGGAGCACTCAAAGTATGGACAAAAATGAGGAAGACAGTAGTATACATTCACCTCTAAATACCAACAGCATGAAAATAGGGAATTTTAGGAGAAACGATTCAAAAAATATAACATGTTTTATTTATATATATATATACATATATTTATATGTATGTGGATATATATATATATACATATATATATATATATGTTATATAACAAATGGTCACAATCCTTCTCTATTGCCTTCATCAAAGTCACACAGAGCCTGGGTCTTCAATTCCTCCATGATTAGCAGAGTCCAAATCTGAGCACCTGGCACAGCAGAAGAGTGGAATTGAACACTTAGGTGGGTTTTTTAAAGTATATTAACATAAAATATTAATAATAAAAGACTCACCAAAAGAAAACTCTAGAAAACAACATGACTGTATTCAATACAGTGCAAGAAGCCCTTTAATAAAGAACTTGAAAGCGGGGAATAGCAGCAGCAGACCTTTACGACTTCTCATGTCTGAGGGACAGTGGCTCCTTGCTGCAGCACCAGCCTGTGGTGGCCTAAGAAAACACCCTGAAGACCTACACTTCCCTCTCGACCTGTAATCTGAGCCACAATATGTGAAAATTTCATATGAGTAGGGGGTCCTAACAATCTTACATTTTAGGTAAATTGTTGCAAACAAAACTTGCTATTTTCTTCCAAAATGTAGAAAATCACAGCTATTTGGGTCAGTTTGAGTTTGTTCATCGTGTCTTCTCAGCACTAACAACAAAGAAAGAAAGGAAGACAGACAGACAGACATACAGACAGACAAAGGAAAATATTATAACCAAGTCTAACGACTGGTTATAAAATGTGAATCTTATGAAAATAGATGGGGGAGATAAGACTGCCTCTTAAGGTGAAGGTTCTGTTAGTGATTGGAAATGGAGGTCATCGTGTCTTTGAAACCCTTCGGTTCTTTCTCTCTGTCTTGGATGATGCCTGCAGATCCTTCCAGCCTGCCTTGCAGGTGTCTTTGTATTACTAAGGAGCTTCTGAGGAAGCTGACACACCTTGCTCTTTGCTTTTTCCCACAG
Seq C2 exon
ATATCACTGACACACACAGCTGGGAAAGAGAGCATGCCCGGGCTCAGCCTGAAGAATGCAGTCCCTCCGGACTTCAGAGAGCTGCCTGGGGCATCTCTGAGACCGAAAGCGACCTCACCTATGGGGAAGTGGAGCAGAGGTTAGATTTGCTTCAAGAGCAACTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007528:ENSRNOT00000009920:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.820 A=NA C2=0.632
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]