GgaINT0048095 @ galGal4
Intron Retention
Gene
ENSGALG00000011082 | KCNH7
Description
potassium channel, voltage gated eag related subfamily H, member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr7:20526492-20531963:+
Coord C1 exon
chr7:20526492-20526755
Coord A exon
chr7:20526756-20531794
Coord C2 exon
chr7:20531795-20531963
Length
5039 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
TTTTGTTTATTTTTCCTCAGATA
3' ss Score
10.4
Exon sequences
Seq C1 exon
ATTATTTCAAAGAAAATGATCAGAGTGATCCTGAACCCACGGGGGACAACTCCAGATACTATCAATCTATTAAGAAACACTTTGAGGAGAAAAAAAGTGGCTCATCGTCATTTGTGTCCTCCATTGAAGATGAGCAAAAACCCCTGTTCTCTGGGGTAGCTGATTACCCATCTGTAACAGAGAAAACTACAGAGCTGGACCTTGAAGAAATGATTCATGCAACAGAAGAAATTCTTACTGACAAAAGAAGTGACTCTTGCAAAG
Seq A exon
GTAATATAACTGGTACTGTTTTTTAAAGTTTGATTAGACATCTTTTTTGGTTTGATTATCAAAAATCATTTTCTTAATGATCCTATCTTTACATAATTGCTACTTTTGTGTTTTCTGAAGAATAAACAAGAACATCTATTTTAGATCAAAAATTAATATTTCCAGGGAGGACTGCTATAGTTTGATACAATGACTGCAGAACCAGATTACAGAACCTCACAAATGCTATTCCAGGTTTTGTTAACAAATAATCTCCTAACTGAACTGCCCTAGAACAGTCATGTAAACAAAATCTTCAGAATTGTACCAGTACTTGACTTCACTGAGTGCCCAAGGATGGAAAGTGTCTTCAAATCAGTACACTTTGATACGCCAAGCTTGGGTTACAGTACAAAATCCTACATAAAAAGAGTTAAATATATCTAGGAGTTGTTCAGACAATTAGTTCCATTCTCTGCATTGATGATGTACAACCAAAATTCAGTGAAAGTAGCTCATAATAGCTTGAAGAAATGCTATCTCATTTTGTTGTATATGTCAGTGAAAATCCTCCCATCTGTAAGTAAAAGGCAAGAACAAAGATTTGATCTTTTGCATCCAAGAAAGGATCAAAACCTAAGAAATCTCAGTTAATTTTACATAGGGTTTAATCACAATCACATTTAAAATTACATTGAATATGATAAAATTTTCATTTTCTCACTGATGTGAAGGGGAAATAATGAAAAGCCATATATTAATACATTCAGTCTTGCTGAAAGTTTGTAATTTTTTCAGTCTGAAGGGAAGAATTACACACTTACAGTTTAATACTGTCTTCCCCAGCAGTTTGTTTTGAGTCAGTTTAACCATTTAATCATTGTTCAATAAACTTTGAATTTTAGGCTATAATTTTAAACTATGCTGATTATTAATCAGGCCAAACAATATATATTTTTTTTCATTTTTAAAGTTTGAATGTGTGAAGTCTGGTCTCTTCAGGATAGGATCATATCAGTATGAACATATAAACTTCTTGCATACGTAATACAATCTGTAAGCTTACCTTTCCACTACTGGTAGCCAAAAATGTGTCCTGGAAGCTATAGCAACATTTTCCAAGGCAACCTACTGCAGATTTTATTTGAGTTAAATTTAGCATGTAAAAAGGTTACATATTTTGATTAAGACTACATTCTTTTTTTTTCGATCTGTTAACTAGCACTTCTGATAATGTGCGTAAAGCTCAAATTCAATAAAATATGATCAGCTTTATGCTTTAAACTGTTATTCCTACTATTAATTAGAGGTTGCTTGTTTATAACTTACCTAAGGGGCAGTTATAAACATAACAAAATTTTGCAATAAACTCTAATTGTATGTATGTATGTATGTAACTGATACATACTTAGCTATCTTCAATCTTGTTTTAACCCTTGATCCTTACTGTTGATGAATGGAAAGACAATAAGAATATATTGAATATCGTTGCCAGAAACTTTATAAAAGTCTCTTCATAATCCTGAAATATGAATCTTAACATCAAAATATGTCTCTTTTCATAAGATCTGATAATTTTTCCATAGCTGCTAATCTGCTGCAGAAAAATACTGTTTTCTGTTCTCACTAAGTTTGGGATATAAGATTGATTCATGAGGTGAACCATGTTACACACTTATTGATTTACCTCTCAGTCTATGATTCTTCAAGCCATGGAAAACCATTGCTGGTTGTAAAGTTATAACTGCTGTTGAGTCTTTCTGAAAAAAAAAAACCGTGTCTATGGAAGTACTTGAAAGTATGCTTAGAACAGTACAAAACCATACCCCACAAGAGATAAGACAAGAGTCTTGCTTACAGCGTATGAACCAACATTATAATTTGAGTGCCAATTCCTTTCCTTTGTCATAAATTAAATGTTTATTTTAATAGTCTACAAATACATATTTGTATTTTGTAACTTCCCCAGAATAACACACAGCATTGGAAATGATGAGATTTTACTGAATGATTTATTGAGTAAAATAGCCAACAACTTGGTTTTACAGGCCATTATAAAGCAATGAAATATAAGACCAGTATTTTTAGTTTCTATTCCACTGGATTTACAACATCGATAATAGCTGCGGCTATAGAAAAAAATTTTACCCTTGAATTTGTCATAAGATTGCTCCCTTCACTTCGCTGAGAGCTTTCCAGATTCCTTGGACACGGCAAGTTGTGACATGTGTACCCACTAAATCCAAATTACATGCTTCTCTGACATTGTTTTCCTCTCCTTCTGTTGGCTTAAGTGGACTGGGAACCTGAATATGTATCTGTGTAGCCAAGATGAAATCTTTTTTCCTTTCCTTCTGTTCAGTGCATAAAATCGGTTATAGGTCATGTCACATGAAATCCAAATACTCTACAGCTCCAGGAAACTTTCTACCACCTGCTAACTAAACAGCACATAATGTAGTAAGCTGCTACGTCTGATTAACAAGAGGAGAAAGTCTCTTCCTCTGCTCGGAGGCATGTAGTGAGAGCTCCCCTTCCTGGCTAAGTCTATTTCAAATAGTACATCTGAAAAGAAATTTTTTTTCCTGTTTCTTTCTGTTTGTTGTTTTCTTCATAGACCAACACTGCTTAAAGATGTGATTGAAAAGGATTAGCTAATAGCATTTGGACAAGCCTCTCATGTGTCACTCACACTGTTTTTTCCTCTTTTATTTGAAACATGGCTCTGGTTGCTGTGGTTTGCTTAGAAAAATTTCCCAAGTGTAAAATGAACATAACCTAAGTTGAGTTATCAGCATGCAGTGCCAAAGAAGTGTTAGGAGAGCCCTGAAAAAAACGTTCAGAAACTATTGAAGGATGTGGGATTCACATCCAACAGCTCCTATGACCAAGGCTGATACCTAATAAGTAGTCAGTGATTTTCTCCAGCTGTACAATGAAGCAGCTGTCTGAGTAAGAACATTTTATGTATTCTGTGACTTTACATAGCTAAATAATTACAAATATGACTCTAATGGGAGATGTACTGAACAGGAGTTAAAGTTTCAATAGCCTTTTTTTTTTTTCTTTCTCCAGAACAGAGGAGAATCTGAGCAGTGCAAAGCAATTTTTGATTGCATATGACAAAAGATTGATTCAAAATAACAAAGGCTGAGGATCACAGAATCACAGAATCATAGAATCAGAATCACAGAAAAAGGATGAGGTTGAAAAGGACCTTAAAGGTCATCTAGTTTCAACCCCCCTGCAATGTGCAAGGTTGACAACCAGTAGACCAGTCTGCCCAGAGCCACATCCAGCCTGGCCTTGAATGCCTCCAGGGATGGGGCATCCACAACCTCCTTGGGCAACCTGTTCCAGTGTGTCACCACCCTCTGAGTGAAAAACTTCCTCCTAACATCTAACCTAAACCTCCTCTGCCTCAGTTTAAAACCATTCCCCCTTGTCCTATCACTATCCACATTCGTAAACAGCTATTCCCCCACCTGTTTATATGCTCCCTTCACTGGACTGGAAGGCCACAATGCAGTCTTCCTGGAGCCTTCTCTTCTCCAATCTAAACAAACCCAGTTCCCTCAACCTTTCTTCAATGCAGAGGTGCTCCAGCCCTAATGAAGATGATGTGTAAATATGTAGAAAAAGCACTGCTCATCATAAATATGTCACCTGTTGGCTCTGCAAAGCTCACAGCAAGATCTTTATATCAGATAAGGGTATGTAATACTACTATATCCCATGATAAATAATTTGTAACATTTCACCAGTTTGGTGAAAAGGAAAAAGAGCCTGAAACAAGGAATGTATACTAATTAAAAAAATATACAGAGGTGTAAATTAAACAAATTGAATGAGGATGAAAAAGTAGCTCAAACAGCAAAAAGGAAAGGAGTGCACTTCAGTTATTTTTGAAGTCAGTTGCAACATTTGACCAAGAAATATTAGGGACAAAATGGATGGGATTTGTACAAGCAGGTTGGGGCCTGGAATAGCCATAATCATTTTCTACAAAGGACTGAATATAAATATAAAGGACCCATACAAGGACTAGGTTTTTATTTACTTGTGTATAAAATATACAGGATTAGAAGGGGAACTAAAATGAGCAATCTAGCTGAAACTCTATAGTAAATCCTAATTATGCATTTGAGGATTTTTAGCTTGAAGTAAATTTACTGTCTGTACCTTAATCCAAAATGTAACCCATAGCTCAAACATAAATATATATGTGTACATATATTTACCATGAAGCTTAATTTAATATTTAAGTGATCTCTGACTGACCTAGCAATGCAAAACATTTCATTCTGTTACAAGTCATAGAATATTAAACAAAATAAACTGGCACCCTTCACACCACAGTACAGCACCAGTCTCTGAAACATGCTTTATGTACCAACATAAGGGTTGGGCTGTAGACTCATAATGCTAAAACTACATCAGTGCAAATTTTTTTCCTTTTGAAAGTAATAACCAATTTAGCTTTGGTTATTTGGTTTGGTTTGGAGACATTCCAACACACTGTAATGCACATCAAATGTTGTAAATGCAATGTAGCAAGTTCTCCTTTTACATCAAAAAGCTAAACAGTAAATATACTTCAGTACAACACTCTAGGGCAAGAGAAGAGGTTTTAGCCAGACACAAAGGCAGTCAAGTACATCATTTCATACACTTAGTTTGGAGCAAATATGTCTAGTTTCAGCTTGAGAAAACTGGGGTTCACTTTTAAAAAATAAGAAAACTAAAGAAATAGAAGTCATTACTTGGCAGAACTCTGATGATATTGACTATATAAAGCTACTTTGTATATGTACAGCTTAAAATATTAGCATGTTGCTATCCTTACATTAAAATTTTATAATTTTTGGATGTGTCCTCTGTTATTTTTCCTTAAACATGGGTAAGGAATAACGACAGTTCAGGCAAATTTCCACCATATCAAGCTGTCTTCTAAGGTTTGGAGAAACAGTGGTAAATGGGATGTTTGAGTGGTGCCAACCCTCTTTAACAGCATGTGTGTAAATCTATACTTTTTCTATATTTTGTTTATTTTTCCTCAG
Seq C2 exon
ATATCACTGATAAAAGAAACTGGGAGGAACAGAACATGAGGGAATACCAAGACTCGCCAAGTCACTCAGCATTACCCCATGTTACATGGGGTATCTGTGATACTGAAAGTGACTATGTATATGGAGAAGTGGAGAATCGATTAGATTTACTTCAAGAACAACTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011082:ENSGALT00000018056:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.655 A=NA C2=0.421
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]