BtaINT0079895 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016729 | KCNT2
Description
potassium channel, sodium activated subfamily T, member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr16:6618417-6620253:+
Coord C1 exon
chr16:6618417-6618530
Coord A exon
chr16:6618531-6620169
Coord C2 exon
chr16:6620170-6620253
Length
1639 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTC
5' ss Score
7.04
3' ss Seq
ATATTTTATTTCTGTTGCAGTCA
3' ss Score
8.53
Exon sequences
Seq C1 exon
ATTTCTGAACAGAAAGAAAGAGAACGAGGTTCTAACTTGGCCTTCATATTCCGACTGCCTTTTGCTGCTGGAAGGGTGTTCAGTATCAGCATGTTGGACACACTTCTTTATCAG
Seq A exon
GTACTCAGTGTTTCTTTCCTGTTGCTCTCTGAAGCATTTATTTTCTATTTTGTTTAGATCCTATCAAACGAATGATACAACTAGTGTTTCTCATGTACTGTCAACTTAAATTGGCTCTGGAAGTAACCCGATATTTTATTTCATGTATTTAATGAATGATCTAAATGTGCCTATGAAAGACATCATAAGAAAAAAATTATTTTTCAGAATACTATATGAAATGATATTAGGCAGTCTTTGACACCAGTGTCCTACAATGTTTCATGTGACATTTGAATGCATTTGCATATTCCTTTACATATATAACTAAACTATAAATAAAAGTTAAGAAAAAATTACTAGGTTAAGAAAAAGACACCTTTCTTTCTAATGCACATTTTTTAAAAATGATACCAAATAATGTCAGTAAACTGTCAAATCAAGGACATTTTCAACATCTGATAATTTTGCCTACTTTAGAAACATGTAAGGAAAATTTTACAACCTCTAAGAACCATTCAGTTTGTTTCTGAATGCCAGAGTTTCACATTGTCATTTCATCATTGCTAAGTTCACAGGATTTTATTTTATACAAATACACTAATTTTTTAACTGTGCCAAAAGCTGGACAGCAGCAATATTTCATATTATTTGATTCAAGTATTCAGATAATTTCTAAATATATCTGTTAAGGAAACAAAAAGATATTCATAGGGCTTTAAACAAAAATCAACAACAAAAAAAATAGTTGAAATATTTGATTGTAAATTTTAGTCATTACAAACTTTTAAAAAATATTCTCTTTTGTTCAGCTTATAGTTTTTTGTTATTAAAAATATAGAATTGTTTTCCTAATGTCCAATACCATGCATAAAATTTAAACATATCACGATATCCTAGAAAATAATAATTTCTCATATTTTTTGAGGACAGCTTAACTGTACATGTGTATTTAGCACACTGACAAGATCGATTTTTATTTCTTTTTTTAATGGAGGCTTAATGATTGGAGAAGGAAATGGCTCCAAACCCACTCCAGTATTCTTGCCTGGAGAATCCCAGGGACAGAGGAGTCTAGCAGGCTATAGTTCATGGGGTCACAAGAGTCAGACACCACTTAGCGACTAAACCACCACCACCTAAAGTGGGCTTCCTTGGTGGCTCAGACTGCTAAGAATCTGCCTGCTAATGCAGGGACCCAGGTTTAATTCTTGGGTCAGAAAGACCCCCTAGAGAAGGGAATGGCAATCCACTTCAGTATCCTTGCCTGGAGAATTCCACGGACCAAGGGGGTCAGACACAACTGAGTGACTAACACTTTCACTTTCAGTGATATGATAGTGCTTCCCTGGTGGCTCAGTGGTAAAGAATCTGCCTGCCAATGCTGAAAACGCAGGTTCAATCCCTGGACCGGGAACGTCCCCTGAGAAGGAAGTGGCAACCCACTCCAGTATTCTTGCCTGGGAAATCCCATGGGCAGAGGAGCCTGGCTGACTAAAGTTCATCAGGTTGCAAAAGAGTCCGGCGTGACTTTAGTCACTAAACAACAGCAACGCCATGATAACCTTTAACATAACCTTTAAGATGTGATAACATATTCACACTCTAAGCTATTCTGTTTTTCATATACACGATAATACATATTTTATTTCTGTTGCAG
Seq C2 exon
TCATTTGTGAAGGACTATATGATTTCTATCACCAGACTTCTGTTGGGATTGGACACTACACCAGGATCGGGATTTCTTTGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016729:ENSBTAT00000048534:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACAGAAAGAAAGAGAACGAGGT
R:
GCAAAGAAATCCCGATCCTGGT
Band lengths:
190-1829
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development