BtaINT0079951 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93667402-93667832:-
Coord C1 exon
chr4:93667747-93667832
Coord A exon
chr4:93667493-93667746
Coord C2 exon
chr4:93667402-93667492
Length
254 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GGGCGACCTCTCTCCCCCAGGAA
3' ss Score
8.8
Exon sequences
Seq C1 exon
GATGCCTCTATCATGGCGTCACTGCTGCCCCTGGAGAGACCCTTCCTGACCCACTAGACCCCGCCTGCTCGCTCTGCACCTGCCAG
Seq A exon
GTGAGGTGGCCCTCTGGGGGCTTGGGAACCCTTAATCCCTTGATCCTCCTCTCTGGCAAGAAAAAAAGGTTGTTCCTCCTCCCGGGCTGCACTCTGCCTGTGACATCCACTGGGAGCAGGATTGGGTTCAGGTCTGCCGGGGCCAGGGGAGGGGGTCAGTACAGGTACTCCCCACGGAGGGGCCGTGTGCAGCCCTGTTTGAGGGTGTGATGATACGGGGGTCGGGATGTGGCCGGGCGACCTCTCTCCCCCAG
Seq C2 exon
GAAGGCTCCATGCGCTGCCAGAAGAAGCCGTGTCCTCCAGCTCTCTGCCCTCGCCCCTCTTCAGGACCCTGCTTCTGCCCCGTGTGCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449:ENSBTAT00000033567:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(47.4=93.1)
A:
NA
C2:
PF0009313=VWC=PD(49.1=90.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTATCATGGCGTCACTG
R:
TGGCACACGGGGCAGAAG
Band lengths:
172-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]