HsaINT0084782 @ hg38
Intron Retention
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128886876-128887300:-
Coord C1 exon
chr7:128887215-128887300
Coord A exon
chr7:128886967-128887214
Coord C2 exon
chr7:128886876-128886966
Length
248 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GATGGGCCTCTCTCCCCCAGGAA
3' ss Score
10.52
Exon sequences
Seq C1 exon
GATGCCGCTACCATGGCGTCACTACTGCCTCCGGAGAGACCCTTCCTGACCCACTTGACCCTACCTGCTCCCTCTGCACCTGCCAG
Seq A exon
GTGAGGCAGCCCCTTTAGGACCTTGGTAACCTTTCCTCCCTTGATACTCCTCTCTGGCCAGGAAGAGGCTGTCTCCTCCACTCAGGTGGCAAGGGCTACACTCTGCCCTTCACATCTCATGGGACAGGACTGGGCTCAGGTGTCCCGGGCCAAGGGAGGGTGTTTGGGCCCCTGCAGGCTCAGTAGGGGCTCCAGCCCTGGGGAAATGTGCAGTCCAGTTGAGGGTGTGATGGGCCTCTCTCCCCCAG
Seq C2 exon
GAAGGTTCCATGCGCTGCCAGAAGAAGCCATGTCCCCCAGCTCTCTGCCCCCACCCCTCTCCAGGCCCCTGCTTCTGCCCTGTTTGCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253:ENST00000620378:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(47.4=93.1)
A:
NA
C2:
PF0009313=VWC=PD(49.1=90.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTACCATGGCGTCACTAC
R:
TGTGGCAAACAGGGCAGAAG
Band lengths:
172-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development