RnoINT0078141 @ rn6
Intron Retention
Gene
ENSRNOG00000021855 | Kcp
Description
kielin/chordin-like protein [Source:RGD Symbol;Acc:1561119]
Coordinates
chr4:56770350-56770769:-
Coord C1 exon
chr4:56770684-56770769
Coord A exon
chr4:56770441-56770683
Coord C2 exon
chr4:56770350-56770440
Length
243 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CAGTGTGATCTCTCCCTCAGGAA
3' ss Score
8.84
Exon sequences
Seq C1 exon
GATGCCTGTACCACGGAATCACCGCTGCCCTCGGAGAGACCCTTCCTGATCCTCTTGACCCCACCTGCTCCCTCTGCACCTGTGAG
Seq A exon
GTGAGCTGAATCTCTTGGCATCTTCCCACCCTTTTTCTTCCTCTCTGGCCTGGAAAGAGTTGTCTGCACCTAGGCTGCAATGAACACATTTTGCTTGTGACATCTGGTGGGACAAGGTTGTGGTCAGGTCTCTGGCCAGGGGAGAGGGCTGGATAAACTCAGTTGGGTGCCTGCCATGCTGGCAGCACAGCCTGACTTGAAGGTGACTGGGACATCCAAGTAACAGTGTGATCTCTCCCTCAG
Seq C2 exon
GAAGGTTCTATGCGCTGTCACAAGAAACCATGTCCTCCGGCTCTCTGCACACACCCTTCTCCAGGCCCCTGTTTCTGCCCTGTGTGTCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021855:ENSRNOT00000050795:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(47.4=93.1)
A:
NA
C2:
PF0009313=VWC=PD(49.1=90.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCTGTACCACGGAATCAC
R:
GACACACAGGGCAGAAACAGG
Band lengths:
173-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]