BtaINT0079965 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93655277-93656097:-
Coord C1 exon
chr4:93655791-93656097
Coord A exon
chr4:93655647-93655790
Coord C2 exon
chr4:93655277-93655646
Length
144 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
TCCTTCCACTCTGCCCGCAGTGG
3' ss Score
10.2
Exon sequences
Seq C1 exon
GTCCCAGAGGGCCCAGGACCTGGTCGGCCCTGTTCCAAGGGCCGTGAGGTGGATCCATGCCAGGCAGCAGGGTACCGTGCCAGGCGTGAGGCCAACGCCCGGTGTGCGGTGCTGAAGTCCGCCCCGTTCAGCCGCTGCCATGCTGTGGTGCCACCAGACCCCTTCTTTGCCGCCTGCGTGTATGACCTCTGTGCTTGCGGGCCCGGTTCCTCCTCTGACGCCTGCCTCTGTGACGCCCTGGAAGCCTATGCTAGCCACTGTCGCCAGGCAGGGGTGACACCAGCCTGGCGGGGCCCCACACTCTGCG
Seq A exon
GTGAGGGGGTAGCGCCCAGTGCAAGCTGGGGAGAGGGTGACACAGAGGGCTCAAGTCTGGACAGGAAAGGTTCAGGGAGGGTTACGGGGTTGGGTGGGGAGCCTGGGGACTGGATGGTGATTCCTCCTTCCACTCTGCCCGCAG
Seq C2 exon
TGGTGGGCTGTCCCCTGGACCGCGGCTTCGTGTTTGATGAGTGTGGCCCACCCTGTCCCCGCACTTGCTTCAACAAGCACGTCCCCCTGGGGGAGCTGGCAGCCCACTGCGTGCGGCCCTGCATCCCCAGCTGCCAGTGCCCAGCGGGCCTGGTGGAGCACGAGGGCCACTGTATCTCACCCGAGGCCTGCCCCTCTGTCCTGCTCACTGGGGACCAGCTGCCCAGCACTCCGCGCAACCCCAGCCAGGAGCTTCAGGGGCCAACCTGAGCCCGGACGACACTGACCAGGACTCATCCGGACATGAAGTCTCCTTTTGGCGAGCACCTCCCGCCCGACCTGGGTGCTGGGAGGCTGGGCGTGGCTCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449:ENSBTAT00000033567:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.169
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGCTAGCCACTGTCGCCA
R:
GTGAGATACAGTGGCCCTCGT
Band lengths:
242-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]