RnoINT0078156 @ rn6
Intron Retention
Gene
ENSRNOG00000021855 | Kcp
Description
kielin/chordin-like protein [Source:RGD Symbol;Acc:1561119]
Coordinates
chr4:56760220-56760909:-
Coord C1 exon
chr4:56760603-56760909
Coord A exon
chr4:56760438-56760602
Coord C2 exon
chr4:56760220-56760437
Length
165 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
GCTTTCCTCTCTGCCTACAGTGG
3' ss Score
8.99
Exon sequences
Seq C1 exon
GTCCCCAAGGGGCTGGGGCCTGGCCGGCCATGTTCTGCAGGCCGAGAGGTGGACCCCTGCCGGGCAGCAGGCTACCGTGCCAGACGTGAGGCCAATGCCCGGTGCGGGATCCTGAAGTCTTCACCGTTCAGTCGCTGCCATGCTGTGGTGCCACCAGAACCCTTCTTTGCCGCCTGTGTGTATGACCTGTGTGCTTGTGGGCCAGGCTCCTCAGCTGATACCTGTCTCTGTGATGCCCTTGAAGCCTATGCTAGCCACTGTCGCCAGGCTGGGGTGACTCCTGTCTGGAGGGGCCCTACACTCTGTG
Seq A exon
GTAAGGGGGTGATACCACATTGATGGAGGGCATTGTAGGGAAAGGAGGGGCAGCCCAAAAGACTCAAGTCTGGACAGAGAGGGCACAGGGAAGCTATAAAGTATGGAGTAACAGCTAGAAGGGTGTGGGGGACCTCTGTGACATTGCTTTCCTCTCTGCCTACAG
Seq C2 exon
TGGTGGGCTGCCCTGTGGAACGTGGCTTTGTGTTTGATGAGTGTGGACCGCCTTGTCCCCGTACCTGTTTCAACCAGCACATACCCCTAGGGGAGCTGGCAGCCCACTGCGTGAGGCCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAGCATGAAGGCCATTGCATCTCACCTGAGGCCTGCCCATCAGTCCTGCTTACTGGAGGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021855:ENSRNOT00000050795:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCTTCACCGTTCAGTCGC
R:
GCGGTCCACACTCATCAAACA
Band lengths:
244-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]