HsaINT0084796 @ hg38
Intron Retention
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128877043-128877790:-
Coord C1 exon
chr7:128877484-128877790
Coord A exon
chr7:128877312-128877483
Coord C2 exon
chr7:128877043-128877311
Length
172 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
GCCTCCCACTCCCCCTGCAGTGG
3' ss Score
9.24
Exon sequences
Seq C1 exon
GTCTCAGAGGGGCTGTGGCCTGGCCGGCCCTGTTCTGCAGGCCGAGAGGTGGATCCGTGCCGGGCAGCAGGTTACCGTGCCAGGCGTGAGGCCAATGCCCGGTGTGGGGTGCTGAAGTCCTCCCCATTCAGTCGCTGCCATGCTGTGGTGCCACCGGAGCCCTTCTTTGCCGCCTGTGTGTATGACCTGTGTGCCTGTGGCCCTGGCTCCTCCGCTGATGCCTGCCTCTGTGATGCCCTGGAAGCCTACGCCAGTCACTGTCGCCAGGCAGGAGTGACACCTACCTGGCGAGGCCCCACGCTGTGTG
Seq A exon
GTGAGGGGGTGATGCCCGCTGCAGGTTGGGGGAGGCTCAGCACAGAGAAGAAGGGCAGCCCGGAGGGCTCAGGGCAGGACCAGGCCGGGTATGGCGAGTCTCGCAGGGGTACGCACAGCAACTGGGGCAGTTTCAGGTGCCTTGGTAACCCCGCCTCCCACTCCCCCTGCAG
Seq C2 exon
TGGTAGGCTGCCCCCTGGAGCGTGGCTTCGTGTTTGATGAGTGCGGCCCACCCTGTCCCCGCACCTGCTTCAATCAGCATATCCCCCTGGGGGAGCTGGCAGCCCACTGCGTGAGGCCCTGCGTGCCCGGCTGCCAGTGCCCTGCAGGCCTGGTGGAGCATGAGGCCCACTGCATCCCACCCGAGGCCTGCCCCCAAGTCCTGCTCACTGGAGACCAGCCACTTGGTGCTCGGCCCAGCCCCAGCCGGGAGCCCCAGGAGACACCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253:ENST00000620378:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.169
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAAGTCCTCCCCATTCA
R:
CGCACTCATCAAACACGAAGC
Band lengths:
243-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development