GgaINT0095192 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:331608-332053:+
Coord C1 exon
chr2:331608-331787
Coord A exon
chr2:331788-331930
Coord C2 exon
chr2:331931-332053
Length
143 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
GCCCAGCTCTTCTCCCACAGTGT
3' ss Score
7.64
Exon sequences
Seq C1 exon
TGCCTGGCGCCTGGGCAGCCTGGGGTGTGTGGTCCTCCTGTGATGCTGAGTGCGGGGGGGGCATGCGGAGCCGCACCCGGAGCTGCACCGACCCCCCACCCAAGAACGGTGGCCAGCCCTGTGCCGGGGAGGCCCTGCAGAGCCAGCCCTGCAACCTGCAGCCCTGTGGGGACACCCGAG
Seq A exon
GTATGGCAATGGGGACATAGGGATGGGGACATGGAGAGGTGGGTGTGATGGGATGGGGACACGGCGCTGTGGGGACACTTGTGGCGCCAGGGTGACACGGGGGAGCATCCTGTCCCCATAGCAGCCCAGCTCTTCTCCCACAG
Seq C2 exon
TGTGTGGCCCTGGGATGGTGTTGGTGCAGGAAGGGGACTGTGTGCAGGGCCTGGTGCCACCCTGTCCCCAAGTCTGCGGGGACCTGAGTGCCACCAGCAGCTGCCAGAGCCCCTGCCAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919:ENSGALT00000039375:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=83.6)
A:
NA
C2:
PF0182612=TIL=PU(54.3=59.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTGGTCCTCCTGTGATG
R:
CTCAGGTCCCCGCAGACTT
Band lengths:
244-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]