BtaINT0141453 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113464081-113464311:+
Coord C1 exon
chr4:113464081-113464260
Coord A exon
chr4:113464261-113464272
Coord C2 exon
chr4:113464273-113464311
Length
12 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGGCACAGGTGAGAGGAGCTGGG
3' ss Score
-43.14
Exon sequences
Seq C1 exon
TGGCTGGGGCGTGGGCTGAGTGGGAGGCCTGGGGGCCCTGCAGCGTCTCGTGTGGGGGCGGCCATCGGAGTCGTCGGAGAAGCTGTATGGACCCCCCGCCCAAGAATGGTGGTGCCCCCTGCCCCGGGCCCCCCCAAGAGAGGGCACCCTGTGGCCTGCAGCCCTGTGCAGGTGGCACAG
Seq A exon
GTGAGAGGAGCT
Seq C2 exon
GGGCTGGGGCGGGGGGGCATCTGAGGGGGGAGCCCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542:ENSBTAT00000043975:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.311 A=NA C2=0.786
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=83.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]