HsaEX1018481 @ hg38
Exon Skipping
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128874524-128879623:-
Coord C1 exon
chr7:128879522-128879623
Coord A exon
chr7:128878558-128878722
Coord C2 exon
chr7:128874524-128874610
Length
165 bp
Sequences
Splice sites
3' ss Seq
TCTCAGGCCTCTCCACACAGGTG
3' ss Score
7.59
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTGGATGGGCACCCGGTGGCCTTGCCCTTCCTGCAGGAGCCGCTGCTGTATGTGGAGCTGCGAGGACACACTGTGATCCTGCACGCCCAGCCCGGGCTCCAG
Seq A exon
GTGCTGTGGGATGGGCAGTCCCAGGTGGAGGTGAGCGTACCTGGCTCCTACCAGGGCCGGACTTGTGGGCTCTGTGGGAACTTCAATGGCTTTGCCCAGGACGATCTGCAGGGCCCTGAGGGGCTGCTCCTGCCCTCGGAGGCTGCGTTTGGGAATAGCTGGCAG
Seq C2 exon
GTGCAAGAGGGCCGCGGGTATCCCCCAGGGCTGGAGCTGCCCCCTGTACTGCTGCAGATGGAGTGGAGCCGGCGGGCCCAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253_MULTIEX5-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(33.9=73.1)
A:
PF0009420=VWD=PD(27.3=74.5)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGCCCTTCCTGCAGGAG
R:
CGGCTCCACTCCATCTGCAG
Band lengths:
154-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains