DreEX6064110 @ danRer10
Exon Skipping
Gene
ENSDARG00000078508 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr18:6945219-6949133:-
Coord C1 exon
chr18:6949032-6949133
Coord A exon
chr18:6947125-6947289
Coord C2 exon
chr18:6945219-6945516
Length
165 bp
Sequences
Splice sites
3' ss Seq
TACAATGTTTGTGATTAAAGGTG
3' ss Score
3.82
5' ss Seq
AAGGTTAAT
5' ss Score
5.2
Exon sequences
Seq C1 exon
GTTGATTATGAGCCAGTCTCCCTGCCGTATCTTAAAGAGCCTTATATTTATCTAGAGCGCAAGACCAACACCATCCTCCTGAACACCAATGTTGGGCTAAAG
Seq A exon
GTGTTGTGGAATGGTCGTTCTCATCTGGAAGTCAGTGTTCCCGGCACCTACAAGAACCACATGTGCGGGTTATGTGGCAACTTCAACAATTACCCTCAGGATGATATGAAACTGCGCAATGGACAAATTGCCACCTCTGAAGCAGCATTTGGAAACAGCTGGAAG
Seq C2 exon
GTGGGCAATGGAAATTCCAGTGTTCAGTGTCCTGACGTGAGGAACATTAACCCGTGTAAGGAGGCCGGATACTCTGCTCGTAAGACAGCAAACTCTCGCTGCGCAGTGCTGAAGTCTCCTGTGTTTGAGCGCTGTCATAAACTGGTTCTGCCCGAGATGTTCTTCGCCTCATGTGTGTATGATCTGTGTGCCTGCGGGTCCAATATGGACGATTGTTTGTGTGACGTGTTGGAGGTTTACGCGTCTGAATGTCGTGAAGCTGGGATTATCGTGCAGTGGAGGACGCCGACGCTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078508-'51-51,'51-49,52-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(22.0=100)
A:
PF0009420=VWD=PD(27.3=74.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTCTCCCTGCCGTATCTT
R:
GAACATCTCGGGCAGAACCAG
Band lengths:
252-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]