MmuEX6003387 @ mm10
Exon Skipping
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29482634-29484716:-
Coord C1 exon
chr6:29484615-29484716
Coord A exon
chr6:29483930-29484094
Coord C2 exon
chr6:29482634-29482940
Length
165 bp
Sequences
Splice sites
3' ss Seq
TCCCAAGCCTCTTTGCACAGGTG
3' ss Score
4.94
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGGACCAGCACACAGTGACCTTGCCCTTCCTCCGGGAGCCACTGCTGTACATTGAGCTTCGTGGTCACACTGTGATCCTGCATGCCCAGCCTGGGCTTCAG
Seq A exon
GTGCTGTGGGACGGGCAATCCCAGGTGGAGGTGAGAGTTCCCAGCTCCTACCGGGGCCAGACTTGTGGTCTCTGTGGGAACTTCAATGGCTTTGCCCAGGATGATCTGCAGGGTCCGGATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGGAAG
Seq C2 exon
GTCCCCAAGGGGCTGGGGCCTGGCCGGCCGTGTTCTGCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTGAAGACTTCACCGTTCAGTCATTGCCATGCTGTGGTGCCCCCGGAACCCTTCTTTGCTGCCTGTGTGTACGACTTGTGTGCTTGTGGTCCAGGCTCCTCCTCTGACACCTGTCTCTGTGATGCCCTTGAAGCCTACGCTAGCCACTGTCGCCAGGCAGGGGTGACTCCTGTCTGGAGGGGTCCTACACTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022_MULTIEX1-30/30=28-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(9.8=57.1)
A:
PF0009420=VWD=PD(27.3=74.5)
C2:
NO
Main Skipping Isoform:
ENSMUST00000101614fB11816
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACACTGTGATCCTGCATGC
R:
CTGGACCACAAGCACACAAGT
Band lengths:
242-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types