RnoEX6012973 @ rn6
Exon Skipping
Gene
ENSRNOG00000021855 | Kcp
Description
kielin/chordin-like protein [Source:RGD Symbol;Acc:1561119]
Coordinates
chr4:56760603-56763494:-
Coord C1 exon
chr4:56763393-56763494
Coord A exon
chr4:56762162-56762326
Coord C2 exon
chr4:56760603-56760909
Length
165 bp
Sequences
Splice sites
3' ss Seq
GTCCTCCCCCCTCTGCACAGGTG
3' ss Score
10.5
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTGGACCAGCACACGGTGACCTTGCCCTTCCTTCGGGAGCCACTGCTGTACATTGAGCTTCGTGGTCACACCGTGATCCTGCATGCCCAGCCTGGGCTTCAG
Seq A exon
GTGCTGTGGGACGGGCAATCCCAGGTGGAGGTGAGAGTTCCCAGCTCCTACCGGGGCCAGACCTGTGGCCTCTGTGGGAACTTCAATGGCTTTGCCCAGGACGATCTGCAGGGTCCGGATGGGAGGCTCCTGCCCACAGAGGCTGCATTTGGGAACAGCTGGAAG
Seq C2 exon
GTCCCCAAGGGGCTGGGGCCTGGCCGGCCATGTTCTGCAGGCCGAGAGGTGGACCCCTGCCGGGCAGCAGGCTACCGTGCCAGACGTGAGGCCAATGCCCGGTGCGGGATCCTGAAGTCTTCACCGTTCAGTCGCTGCCATGCTGTGGTGCCACCAGAACCCTTCTTTGCCGCCTGTGTGTATGACCTGTGTGCTTGTGGGCCAGGCTCCTCAGCTGATACCTGTCTCTGTGATGCCCTTGAAGCCTATGCTAGCCACTGTCGCCAGGCTGGGGTGACTCCTGTCTGGAGGGGCCCTACACTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021855-'45-48,'45-47,46-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(22.0=100)
A:
PF0009420=VWD=PD(27.3=74.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTGCTGTACATTGAGCT
R:
TACACACAGGCGGCAAAGAAG
Band lengths:
246-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]