BtaEX6028524 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93655791-93658001:-
Coord C1 exon
chr4:93657900-93658001
Coord A exon
chr4:93656526-93656690
Coord C2 exon
chr4:93655791-93656097
Length
165 bp
Sequences
Splice sites
3' ss Seq
GTCCCCACCTCTCTGCACAGGTG
3' ss Score
9.49
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTGGACGGGCGCCCTGTGGCCTTGCCCTTCCTGCAGGAACCGCTGTTCTATGTAGAGCTTCGGGGACGCACGGTGGTGCTGCACTCCCAGCCAGGGCTCCAG
Seq A exon
GTGCTGTGGGATGGGCGGTCCCAGGTGGAGGTGAGAGTGCCTGGCTCCTACCGGGGCCACATGTGTGGGCTCTGCGGCAACTTCAATGGCTTTGCCCAGGATGACCTGCGGGACCCTGAGGAACTGCTCCGGTCCACTGAGGCTGCATTTGGGAATAGCTGGCAG
Seq C2 exon
GTCCCAGAGGGCCCAGGACCTGGTCGGCCCTGTTCCAAGGGCCGTGAGGTGGATCCATGCCAGGCAGCAGGGTACCGTGCCAGGCGTGAGGCCAACGCCCGGTGTGCGGTGCTGAAGTCCGCCCCGTTCAGCCGCTGCCATGCTGTGGTGCCACCAGACCCCTTCTTTGCCGCCTGCGTGTATGACCTCTGTGCTTGCGGGCCCGGTTCCTCCTCTGACGCCTGCCTCTGTGACGCCCTGGAAGCCTATGCTAGCCACTGTCGCCAGGCAGGGGTGACACCAGCCTGGCGGGGCCCCACACTCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449-'53-60,'53-58,54-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.049
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(22.0=100)
A:
PF0009420=VWD=PD(27.3=74.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGTTCTATGTAGAGCTTCGG
R:
CACAGAGGTCATACACGCAGG
Band lengths:
255-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]