HsaEX0033139 @ hg38
Exon Skipping
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128876865-128878722:-
Coord C1 exon
chr7:128878558-128878722
Coord A exon
chr7:128877484-128877750
Coord C2 exon
chr7:128876865-128877311
Length
267 bp
Sequences
Splice sites
3' ss Seq
TGGCCGGCCCTGTTCTGCAGGCC
3' ss Score
8.04
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
GTGCTGTGGGATGGGCAGTCCCAGGTGGAGGTGAGCGTACCTGGCTCCTACCAGGGCCGGACTTGTGGGCTCTGTGGGAACTTCAATGGCTTTGCCCAGGACGATCTGCAGGGCCCTGAGGGGCTGCTCCTGCCCTCGGAGGCTGCGTTTGGGAATAGCTGGCAG
Seq A exon
GCCGAGAGGTGGATCCGTGCCGGGCAGCAGGTTACCGTGCCAGGCGTGAGGCCAATGCCCGGTGTGGGGTGCTGAAGTCCTCCCCATTCAGTCGCTGCCATGCTGTGGTGCCACCGGAGCCCTTCTTTGCCGCCTGTGTGTATGACCTGTGTGCCTGTGGCCCTGGCTCCTCCGCTGATGCCTGCCTCTGTGATGCCCTGGAAGCCTACGCCAGTCACTGTCGCCAGGCAGGAGTGACACCTACCTGGCGAGGCCCCACGCTGTGTG
Seq C2 exon
TGGTAGGCTGCCCCCTGGAGCGTGGCTTCGTGTTTGATGAGTGCGGCCCACCCTGTCCCCGCACCTGCTTCAATCAGCATATCCCCCTGGGGGAGCTGGCAGCCCACTGCGTGAGGCCCTGCGTGCCCGGCTGCCAGTGCCCTGCAGGCCTGGTGGAGCATGAGGCCCACTGCATCCCACCCGAGGCCTGCCCCCAAGTCCTGCTCACTGGAGACCAGCCACTTGGTGCTCGGCCCAGCCCCAGCCGGGAGCCCCAGGAGACACCCTGAGCCAGGACAGTGCCTGATAAGGGTTCATCAGGCCAGGAGTCTCCCCTTGGCGAGCAGTTCCCACCCTGGTTAGGGCTATGGAGAGAATGCCCTGCCTGGACACTGGAGCCTGGGCCCCTGCCCTGCAAAGACCCCCGCCATGTTGAGTCACCAGCAGTAAACTCTAGGCCTGCCCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253-'54-67,'54-66,55-67
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.169
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(27.3=74.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGAACTTCAATGGCTTTGC
R:
TCTCCAGTGAGCAGGACTTGG
Band lengths:
306-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development