BtaEX6028525 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93655277-93656690:-
Coord C1 exon
chr4:93656526-93656690
Coord A exon
chr4:93655791-93656097
Coord C2 exon
chr4:93655277-93655646
Length
307 bp
Sequences
Splice sites
3' ss Seq
AGGCCGCCTTCCCCTTCTAGGTC
3' ss Score
11.39
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTGCTGTGGGATGGGCGGTCCCAGGTGGAGGTGAGAGTGCCTGGCTCCTACCGGGGCCACATGTGTGGGCTCTGCGGCAACTTCAATGGCTTTGCCCAGGATGACCTGCGGGACCCTGAGGAACTGCTCCGGTCCACTGAGGCTGCATTTGGGAATAGCTGGCAG
Seq A exon
GTCCCAGAGGGCCCAGGACCTGGTCGGCCCTGTTCCAAGGGCCGTGAGGTGGATCCATGCCAGGCAGCAGGGTACCGTGCCAGGCGTGAGGCCAACGCCCGGTGTGCGGTGCTGAAGTCCGCCCCGTTCAGCCGCTGCCATGCTGTGGTGCCACCAGACCCCTTCTTTGCCGCCTGCGTGTATGACCTCTGTGCTTGCGGGCCCGGTTCCTCCTCTGACGCCTGCCTCTGTGACGCCCTGGAAGCCTATGCTAGCCACTGTCGCCAGGCAGGGGTGACACCAGCCTGGCGGGGCCCCACACTCTGCG
Seq C2 exon
TGGTGGGCTGTCCCCTGGACCGCGGCTTCGTGTTTGATGAGTGTGGCCCACCCTGTCCCCGCACTTGCTTCAACAAGCACGTCCCCCTGGGGGAGCTGGCAGCCCACTGCGTGCGGCCCTGCATCCCCAGCTGCCAGTGCCCAGCGGGCCTGGTGGAGCACGAGGGCCACTGTATCTCACCCGAGGCCTGCCCCTCTGTCCTGCTCACTGGGGACCAGCTGCCCAGCACTCCGCGCAACCCCAGCCAGGAGCTTCAGGGGCCAACCTGAGCCCGGACGACACTGACCAGGACTCATCCGGACATGAAGTCTCCTTTTGGCGAGCACCTCCCGCCCGACCTGGGTGCTGGGAGGCTGGGCGTGGCTCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449-'54-61,'54-60,55-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.049 C2=0.169
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(27.3=74.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGAGGCTGCATTTGGGAA
R:
AGGAGACTTCATGTCCGGATGA
Band lengths:
345-652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]