HsaEX0033139 @ hg19
Exon Skipping
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:17585]
Coordinates
chr7:128514578-128518776:-
Coord C1 exon
chr7:128518612-128518776
Coord A exon
chr7:128517538-128517844
Coord C2 exon
chr7:128514578-128514664
Length
307 bp
Sequences
Splice sites
3' ss Seq
GGGCTGCTCTCCCCACCCAGGTC
3' ss Score
8.77
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
GTGCTGTGGGATGGGCAGTCCCAGGTGGAGGTGAGCGTACCTGGCTCCTACCAGGGCCGGACTTGTGGGCTCTGTGGGAACTTCAATGGCTTTGCCCAGGACGATCTGCAGGGCCCTGAGGGGCTGCTCCTGCCCTCGGAGGCTGCGTTTGGGAATAGCTGGCAG
Seq A exon
GTCTCAGAGGGGCTGTGGCCTGGCCGGCCCTGTTCTGCAGGCCGAGAGGTGGATCCGTGCCGGGCAGCAGGTTACCGTGCCAGGCGTGAGGCCAATGCCCGGTGTGGGGTGCTGAAGTCCTCCCCATTCAGTCGCTGCCATGCTGTGGTGCCACCGGAGCCCTTCTTTGCCGCCTGTGTGTATGACCTGTGTGCCTGTGGCCCTGGCTCCTCCGCTGATGCCTGCCTCTGTGATGCCCTGGAAGCCTACGCCAGTCACTGTCGCCAGGCAGGAGTGACACCTACCTGGCGAGGCCCCACGCTGTGTG
Seq C2 exon
GTGCAAGAGGGCCGCGGGTATCCCCCAGGGCTGGAGCTGCCCCCTGTACTGCTGCAGATGGAGTGGAGCCGGCGGGCCCAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGTGGGATGGGCAG
R:
GCCGGCTCCACTCCATCT
Band lengths:
238-545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)