DreEX6064111 @ danRer10
Exon Skipping
Gene
ENSDARG00000078508 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr18:6939348-6947289:-
Coord C1 exon
chr18:6947125-6947289
Coord A exon
chr18:6945219-6945516
Coord C2 exon
chr18:6939348-6941877
Length
298 bp
Sequences
Splice sites
3' ss Seq
AATATGAATAATTTTTTCAGGTG
3' ss Score
5.63
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTGTTGTGGAATGGTCGTTCTCATCTGGAAGTCAGTGTTCCCGGCACCTACAAGAACCACATGTGCGGGTTATGTGGCAACTTCAACAATTACCCTCAGGATGATATGAAACTGCGCAATGGACAAATTGCCACCTCTGAAGCAGCATTTGGAAACAGCTGGAAG
Seq A exon
GTGGGCAATGGAAATTCCAGTGTTCAGTGTCCTGACGTGAGGAACATTAACCCGTGTAAGGAGGCCGGATACTCTGCTCGTAAGACAGCAAACTCTCGCTGCGCAGTGCTGAAGTCTCCTGTGTTTGAGCGCTGTCATAAACTGGTTCTGCCCGAGATGTTCTTCGCCTCATGTGTGTATGATCTGTGTGCCTGCGGGTCCAATATGGACGATTGTTTGTGTGACGTGTTGGAGGTTTACGCGTCTGAATGTCGTGAAGCTGGGATTATCGTGCAGTGGAGGACGCCGACGCTCTGTG
Seq C2 exon
CTGTGGGTTGCCCACTGGATCGTGGTTATGTGTTTGACGAATGCGGCCCACCATGTCCCAAGACATGTTTTAATAAAGACGTGCCGCTCGGTGTCATCGAGGCTCATTGTTTTAAACCCTGCGTCCCAGGATGTCAGTGTCCCGCTGGACTGGTGGAGCACAACGCCCACTGCATCGCCCCTGAAAAATGCCCCAAAATTATCCACGACAATCTCTGAACATCCTGTGGAGTCAACTCTGTTTGTCTGCAGTGTCTAAATCTGATTCAGTCTTGCTTTTAATGAATTAATCCTGACATACTACGATTCAAAAACCAGCGCTTAAAGACAGCCTGACATCACAAATTGGCAACCCAGGCTTATTGTAAATATGTACCCCCGTATACAATTCTGGAGAGCACAAATTATGTAGCCAGAGCTATGTCTGGCTTCATTAGTTCCTTTTAGAGCTTACCAGGTGACCGTTTACCTCAGTGTAGAGGGCTTTTACACTGTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078508-'52-52,'52-51,53-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(27.3=74.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAGAACCACATGTGCGGG
R:
ATTTTTCAGGGGCGATGCAGT
Band lengths:
306-604
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]