RnoEX6012974 @ rn6
Exon Skipping
Gene
ENSRNOG00000021855 | Kcp
Description
kielin/chordin-like protein [Source:RGD Symbol;Acc:1561119]
Coordinates
chr4:56760220-56762326:-
Coord C1 exon
chr4:56762162-56762326
Coord A exon
chr4:56760603-56760909
Coord C2 exon
chr4:56760220-56760437
Length
307 bp
Sequences
Splice sites
3' ss Seq
TGGTTGCTCTCTCTGTGTAGGTC
3' ss Score
10.77
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
GTGCTGTGGGACGGGCAATCCCAGGTGGAGGTGAGAGTTCCCAGCTCCTACCGGGGCCAGACCTGTGGCCTCTGTGGGAACTTCAATGGCTTTGCCCAGGACGATCTGCAGGGTCCGGATGGGAGGCTCCTGCCCACAGAGGCTGCATTTGGGAACAGCTGGAAG
Seq A exon
GTCCCCAAGGGGCTGGGGCCTGGCCGGCCATGTTCTGCAGGCCGAGAGGTGGACCCCTGCCGGGCAGCAGGCTACCGTGCCAGACGTGAGGCCAATGCCCGGTGCGGGATCCTGAAGTCTTCACCGTTCAGTCGCTGCCATGCTGTGGTGCCACCAGAACCCTTCTTTGCCGCCTGTGTGTATGACCTGTGTGCTTGTGGGCCAGGCTCCTCAGCTGATACCTGTCTCTGTGATGCCCTTGAAGCCTATGCTAGCCACTGTCGCCAGGCTGGGGTGACTCCTGTCTGGAGGGGCCCTACACTCTGTG
Seq C2 exon
TGGTGGGCTGCCCTGTGGAACGTGGCTTTGTGTTTGATGAGTGTGGACCGCCTTGTCCCCGTACCTGTTTCAACCAGCACATACCCCTAGGGGAGCTGGCAGCCCACTGCGTGAGGCCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAGCATGAAGGCCATTGCATCTCACCTGAGGCCTGCCCATCAGTCCTGCTTACTGGAGGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021855-'46-50,'46-48,47-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(27.3=74.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAGTTCCCAGCTCCTACC
R:
AGTAAGCAGGACTGATGGGCA
Band lengths:
343-650
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]