MmuEX6003388 @ mm10
Exon Skipping
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29482036-29484144:-
Coord C1 exon
chr6:29483930-29484144
Coord A exon
chr6:29482634-29482940
Coord C2 exon
chr6:29482036-29482462
Length
307 bp
Sequences
Splice sites
3' ss Seq
TGATTGCTGTCTCCATGTAGGTC
3' ss Score
10.1
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
CTTGGGGTCTCCGTCCTTCCCCCTCCCTAGTCCCAAGCCTCTTTGCACAGGTGCTGTGGGACGGGCAATCCCAGGTGGAGGTGAGAGTTCCCAGCTCCTACCGGGGCCAGACTTGTGGTCTCTGTGGGAACTTCAATGGCTTTGCCCAGGATGATCTGCAGGGTCCGGATGGGAGGCTCCTGCCCACAGAGGCTTCGTTTGGGAACAGCTGGAAG
Seq A exon
GTCCCCAAGGGGCTGGGGCCTGGCCGGCCGTGTTCTGCAGGCCGAGAGGTGGACCCGTGCCGGGCAGCAGGCTACCGTGCCAGGCGTGAGGCCAATGCCCGGTGCGGGATCCTGAAGACTTCACCGTTCAGTCATTGCCATGCTGTGGTGCCCCCGGAACCCTTCTTTGCTGCCTGTGTGTACGACTTGTGTGCTTGTGGTCCAGGCTCCTCCTCTGACACCTGTCTCTGTGATGCCCTTGAAGCCTACGCTAGCCACTGTCGCCAGGCAGGGGTGACTCCTGTCTGGAGGGGTCCTACACTCTGTG
Seq C2 exon
TGGTGGGCTGCCCTGTGGACCGTGGCTTTGTGTTTGATGAGTGTGGACCACCTTGTCCCCGTACCTGTTTCAACCGGCACATACCCCTAGGGGAACTGGCAGCCCACTGTGTGAGACCCTGTGTTCCAGGCTGCCAGTGTCCTGCAGGCCTGGTGGAACATGAAGGCCATTGCATCTCACCTGAGGTCTGCCCACCAGTCCTGCTTACTGGCGACTAGCCAGCTCACATCCTGTCCAATCCCAGTCAGGAGCAGCCCCTGGTTCCATGCTGAGTTAAGAATACCCATATCCCGAACTTACCTGGCCAGAGGTTACCCCTTGGTGAGCAGTAGTGGAGACTGCCCTGCTCAGGCAATGGGATCTTATGCCAGTCCTCCAGACATCCACAGTGTGAAAACACAAGAATAAACTCTACACTTGCCCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022-'51-74,'51-73,53-74=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(27.3=74.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAGTCCCAAGCCTCTTTGC
R:
CTTCATGTTCCACCAGGCCTG
Band lengths:
355-662
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types