HsaINT0084795 @ hg38
Intron Retention
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128877484-128878722:-
Coord C1 exon
chr7:128878558-128878722
Coord A exon
chr7:128877791-128878557
Coord C2 exon
chr7:128877484-128877790
Length
767 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GGGCTGCTCTCCCCACCCAGGTC
3' ss Score
8.77
Exon sequences
Seq C1 exon
GTGCTGTGGGATGGGCAGTCCCAGGTGGAGGTGAGCGTACCTGGCTCCTACCAGGGCCGGACTTGTGGGCTCTGTGGGAACTTCAATGGCTTTGCCCAGGACGATCTGCAGGGCCCTGAGGGGCTGCTCCTGCCCTCGGAGGCTGCGTTTGGGAATAGCTGGCAG
Seq A exon
GTGAGTGGTACAGGAACCGGGGATGGGGATTAGGGGAGACGCAGCTGAGCATGAGTCTCAGAGCAACCCTCTGGCATGGAAAGCAGGGAAGGGGGGCGAAGTCACACAAGATAGGCTTTTGGGCTTTCAGGGAGGTGTGGGGGCTTCTTGCCTGTCTTGGTGCTGGAGAGGTAGGGTGGCTTGTCAAAAGAGGCCTCATTGGCCGGGCAGGGTGGCTCATGCCTATAATCCCAGCACTTTGGGATGCCGAGGTGGGTGGATCACCTGAGGTTGGGAGTTTGAAACCAGCCTGACCAACATGGAGAAACCCCATCTCTACTAAAAATACAAAATTAGCCCAGCCTGGTGGTGCATATGCCTGTAATCCCAGCTACTCGGGTGGCTGAGGCAGGAGAATCACTTGAACCCAGGAAGTGGAAGTTGTGGTGAGCTGAGATCGTGCCACTGCACTCCAGCCTGAGCAACAAGAGCAAAATTCTGTCTCAAAAAAAAAAAAAAAAAAGAAGGCTTGTTACCTGAACCCTCAAGCCTTGCTTTGCCACTCACTGGCTGTGTGACCTTGGACAAGTGCTGACCTACTCTGGCCTTGGTCTGTCCTTCTGTAAAATGGGGACAAAAAGAAGGTAGACAGTACTTCATTTGCTGTTCTTTTAGGGAGGTTTTGGGGACTAAAGCAAATGACTGGGTGGGAAGTGCTTTGAAGAGCACGGCATGCAGAGGCCAGCTGCCAGTGGTGCTGTCACGTCAGGGCTGCTCTCCCCACCCAG
Seq C2 exon
GTCTCAGAGGGGCTGTGGCCTGGCCGGCCCTGTTCTGCAGGCCGAGAGGTGGATCCGTGCCGGGCAGCAGGTTACCGTGCCAGGCGTGAGGCCAATGCCCGGTGTGGGGTGCTGAAGTCCTCCCCATTCAGTCGCTGCCATGCTGTGGTGCCACCGGAGCCCTTCTTTGCCGCCTGTGTGTATGACCTGTGTGCCTGTGGCCCTGGCTCCTCCGCTGATGCCTGCCTCTGTGATGCCCTGGAAGCCTACGCCAGTCACTGTCGCCAGGCAGGAGTGACACCTACCTGGCGAGGCCCCACGCTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253:ENST00000620378:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(27.3=74.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCTCTGTGGGAACTTCAA
R:
TAGGCTTCCAGGGCATCACAG
Band lengths:
348-1115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development