BtaINT0080499 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021018 | KHSRP
Description
KH-type splicing regulatory protein [Source:HGNC Symbol;Acc:HGNC:6316]
Coordinates
chr7:19264077-19264768:+
Coord C1 exon
chr7:19264077-19264126
Coord A exon
chr7:19264127-19264696
Coord C2 exon
chr7:19264697-19264768
Length
570 bp
Sequences
Splice sites
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
3' ss Seq
TCTTCTTTTTCTCCACCCAGTCA
3' ss Score
8.44
Exon sequences
Seq C1 exon
GACTTCAATGACAGAAGAGTACCGAGTTCCAGACGGCATGGTGGGACTAA
Seq A exon
GTGAGTGTGAACCACTGTGGTCCTGTGGTGCCCATTAACCCCTGCCCCGTGCCCCCAGGGCAGTCTCTCAGGAGAGCGCCTGCCAACCCTGGGACCTGTGGTCTGAAGGAGCCAGATTATTTTTTCCCCTCATTACATATGGTGGAAATACATATTTATGTATGTAGTTTCTTTTGTGGTTGGAAATCCCAAAGATGAGTCTGTTCATATTTTTTTTTCCTGCTGATGCCTCCTCCCCCCCGCTGCCCCTCTGACCCAGGCCCAGGCTCTGGGGCAGGTGCAGGAAAGGGTGAGTGGAATGGGGAGTGATTGCCTGGACAGCCCCCCAACCCAGCTCAGAGATCTGGTGAGGGGCACCAGAAGGGGCTGTGCAGAAACATAGAGGCCACAGGAGCACTGAAGGAGCCTGATGTGTTTTGCAATTTTTGTTTGTTTTTCGTTTTTGTTATTTTTTTCTTTTATTTTGAAGGAGCTGTTTTGTGCTTACTCTCTCATTCATTCTCTGGGCAGGGGGGCTCAGCGCCAGCCTCCTCCCATCCATCTCTGCTCTTCTTCTTTTTCTCCACCCAG
Seq C2 exon
TCATCGGCAGAGGAGGTGAACAGATTAACAAAATCCAGCAGGACTCAGGCTGCAAAGTCCAAATCTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021018:ENSBTAT00000027991:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.800
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(20.6=72.2)
A:
NA
C2:
PF0001324=KH_1=FE(38.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]