DreINT0085721 @ danRer10
Intron Retention
Gene
ENSDARG00000026489 | khsrp
Description
KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
Coordinates
chr1:54289902-54290641:-
Coord C1 exon
chr1:54290583-54290641
Coord A exon
chr1:54289974-54290582
Coord C2 exon
chr1:54289902-54289973
Length
609 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
ATCTTTGTGTGTGTTTGTAGTCA
3' ss Score
7.3
Exon sequences
Seq C1 exon
TGTTCGTCCTTCGTCGATGACAGAAGAGTACAGAGTCCCTGATGGCATGGTTGGCCTCA
Seq A exon
GTAAGTTCATGTTTCTCATCATGCATTGCTGGCAGTATATTTTTCAAAAATATGCACATTAAGAACTTTTAAAATGTAGTTTTCAGCCCCATAAACTAAATGTACAGCCAAAATCATATTTCTTTTTAAGATTAAGTTTTTATAATACATATTTAATTTAATTCTGAAAATGTACAACTGATTTAAATATTCATATATAATGTGTAGTTATTGATAAATAATAATGCATTAATTATAAGAATACAAGTGCTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATATATATATATATATATATATATATATATATATATATATATATATATATATATAATTTATTGTGGATGGTATTTAGTATTATAATTTTGGGAGACAGAGATGTTGTACATGTTCATTAATGGCTGGTGGTGTTTTGTTTACATTCTTGCATTATATATGGATTTAGAAGTAGTCATTTGATCTTTGTGTGTGTTTGTAG
Seq C2 exon
TCATTGGTCGAGGTGGCGAGCAGATCAATAAGATCCAGCAGGACTCTGGTTGTAAAGTTCAGATCGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026489:ENSDART00000038330:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.651 A=NA C2=0.640
Domain overlap (PFAM):
C1:
PF044029=SIMPL=PD(15.4=57.1),PF0001324=KH_1=PU(20.6=61.9)
A:
NA
C2:
PF0001324=KH_1=FE(38.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]